Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0960
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    28   4.8  
At5g24080.1 68418.m02828 protein kinase family protein contains ...    28   6.4  

>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 49  TDLINSSDGWEN*FSRITPELSVS---ELIFHVITSEIPE 159
           T  +NSS GW++ F   TP +  +   E++  VIT  +PE
Sbjct: 471 TQAVNSSVGWQSIFEWATPLVQANRWLEILDPVITCGLPE 510


>At5g24080.1 68418.m02828 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 470

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 176 SKRLGTSGISEVIT*KISSETLSSGVIREN*FSHPSELLIKSVNEVFSKYVFNLLTSC 3
           S+ LG+ G   V    ++ ETL +    +   SH     I  VN + S +  NL+  C
Sbjct: 131 SQLLGSGGFGTVYKGTVAGETLVAVKRLDRALSHGEREFITEVNTIGSMHHMNLVRLC 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,287
Number of Sequences: 28952
Number of extensions: 213666
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)