Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0959
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    33   0.002
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   7.2  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 18  YFNMFYLFIICYKYVFRYFLVTTNYFLFNAYCASAIYELKTITIISIVR 164
           YF    + ++C  Y  R F++   +F    YCA ++Y LK+   +++VR
Sbjct: 287 YFYCALIILLCIYYFCRAFIIFPTHF----YCAFSLYPLKSTFYLNVVR 331



 Score = 30.7 bits (66), Expect = 0.012
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 15  IYFNMFYLFIICYKYVFRYFL-VTTNYFLFNAYCASAIYELKTITIISIVRLLY 173
           I+FNM  LF++C  Y   + L +   Y+ ++A+    I+ L    +I ++ + Y
Sbjct: 187 IFFNMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYY 240



 Score = 28.3 bits (60), Expect = 0.063
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 18  YFNMFYLFIICYKYVFRYFLVTTNYFLFNAYCASAIYELKTITIISIVRLLYC 176
           YF +   F++C  Y +  F++ T + LF   C   IY      II  + LL+C
Sbjct: 135 YFVVPLFFLLCIYYFYCAFIIFTVHLLF-LLC---IYHFFCAFIIFTMHLLFC 183



 Score = 25.0 bits (52), Expect = 0.59
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 9   VNIYFNMFYLFIICYKYVFRYFLVTTNYFLFNAYCASAIY 128
           V+I FN+  LF++C  Y   + L    + +F  +     Y
Sbjct: 62  VSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLCTY 101



 Score = 25.0 bits (52), Expect = 0.59
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 18  YFNMFYLFIICYKYVFRYFLVTTNYFLFNAYCASAIYELKTITIISIVRLLY 173
           YF +  LF   +     +FL+ T YF +       +Y      II  V LL+
Sbjct: 78  YFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLF 129



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/57 (17%), Positives = 24/57 (42%)
 Frame = +3

Query: 15  IYFNMFYLFIICYKYVFRYFLVTTNYFLFNAYCASAIYELKTITIISIVRLLYCKTV 185
           IY+  +Y FI+   ++     +   Y++   +C + I     +  +  +   YC  +
Sbjct: 238 IYY-FYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALI 293



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 606 LYCFHYFPLHIKCFIFIYF 662
           L C  YF LH+     IY+
Sbjct: 196 LLCLDYFTLHLLFLPCIYY 214


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 321 KPYPVPFA 344
           +PYPVPFA
Sbjct: 309 RPYPVPFA 316


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +2

Query: 14  YIF*YVLFIYYML*ICFQIFF 76
           Y+  +V+ + Y+L +C+ +++
Sbjct: 101 YLLLFVINVLYVLTLCYAVYY 121


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 321 KPYPVPFAPCIQPVIPYHSIMYK 389
           KP   PF P +  V PY    Y+
Sbjct: 436 KPELRPFEPAVTAVQPYQDQEYQ 458


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,389
Number of Sequences: 336
Number of extensions: 3252
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)