Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0959
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    31   0.16 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   3.4  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   4.5  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   4.5  

>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 84  TNYFLFNAYCASAIYELKTITIISIVRLLYCKTVT*ISG 200
           TNY     Y     Y ++TIT++  ++L Y K +T + G
Sbjct: 72  TNYLFLGDYVDRGYYSIETITLLICLKLRYPKRITLLRG 110


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 42  IICYKYVFRYFLVTTNYFLFNAYCASAIYELKTITIISI 158
           +IC+K++F Y       +L   YC +  +  + + I+ +
Sbjct: 185 LICFKHIFLYVAPAYFVYLLRVYCFTPNFRPQFLNILKL 223


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 449 DSQSIEFNLRN--HFFYFLFQSDSGSHIVHKH*L*GKFHDVII 571
           D QS+E +LR   HF  FL+ S   SHI   + +    + VI+
Sbjct: 142 DVQSVEISLRFVLHFVSFLYNSSFISHIYGNYDVFSTLYTVIL 184


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 323 AIPRSLCTLYTACYSLPLNYVQVTNTIEINKHFTNSSL 436
           A+P  L  L +  Y+ P+ ++  TN+    + FTNS L
Sbjct: 363 AVPTVLSGLPSVAYTPPVMHIPTTNSPLTPQSFTNSFL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,511
Number of Sequences: 5004
Number of extensions: 50232
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)