Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0959
         (693 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            27   0.56 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   9.1  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   9.1  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 288  VVDEL--TDHLVLTVIGAHGHQQRKFRNVP*DLRSKSQFYSTV 166
            V+DE+  TD+LVLT++     +  K+ N    L S SQ Y T+
Sbjct: 2962 VIDEIIITDNLVLTILKKKHRRSVKYSN----LTSDSQSYETI 3000


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 322 SHTPFPLHPVYSLLFLTTQLCTS 390
           S TP PLHP ++    +TQ  TS
Sbjct: 245 SATPLPLHPYHTDSDCSTQDSTS 267


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 322 SHTPFPLHPVYSLLFLTTQLCTS 390
           S TP PLHP ++    +TQ  TS
Sbjct: 245 SATPLPLHPYHTDSDCSTQDSTS 267


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,649
Number of Sequences: 2352
Number of extensions: 12236
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)