Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0959
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.8  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 615 FHYFPLHIKCFIFIYFGE 668
           +H+F + +   IF+YFGE
Sbjct: 5   YHFFFILVITLIFLYFGE 22


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 206 GTLRNLRC*CPWAPMTVNTKWS 271
           G   NL+C  P   + +N +WS
Sbjct: 598 GEFANLQCIVPTGDLPLNIRWS 619


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 638  NMKRKV--MKTIKNILLFHFSIKQI*SHHEI 552
            NM+ K+  MK  +   LFH+S+    S+H+I
Sbjct: 1017 NMQWKIWPMKGEEKSRLFHYSVVPFVSNHDI 1047


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 461 IEFNLRNHFFYFLFQ 505
           + FNL+ H  YFL Q
Sbjct: 236 VSFNLQRHTGYFLIQ 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,099
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)