Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0959
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29040.1 68415.m03530 exostosin family protein contains Pfam ...    29   3.9  
At5g51600.1 68418.m06397 microtubule associated protein (MAP65/A...    28   5.1  
At2g42500.2 68415.m05259 serine/threonine protein phosphatase PP...    28   6.8  
At2g42500.1 68415.m05258 serine/threonine protein phosphatase PP...    28   6.8  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    27   8.9  

>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 720

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 689 KVSRCDIFPKINKNKTFNMKRKVMKTIKNILLFHFSIK 576
           KVS  ++  +I + K F M+ +V++ I  ++ FH S K
Sbjct: 618 KVSIENVLSRIPRTKVFAMREQVIRLIPRLMYFHPSSK 655


>At5g51600.1 68418.m06397 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P50275
           Anaphase spindle elongation protein {Saccharomyces
           cerevisiae}, protein regulating cytokinesis 1 (PRC1)
           [Homo sapiens] GI:2865521; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 314 KVEAIPRSLCTLYTACYSLPLNYVQVTNTI 403
           +VE I + LCTLY+ C  L +++ +V   +
Sbjct: 180 RVETIRKHLCTLYSHCSVLGMDFNEVVGQV 209


>At2g42500.2 68415.m05259 serine/threonine protein phosphatase
           PP2A-3 catalytic subunit (PP2A3) identical to SP|Q07100
           Serine/threonine protein phosphatase PP2A-3 catalytic
           subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains
           Pfam profile PF00149: Ser/Thr protein phosphatase
          Length = 266

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 84  TNYFLFNAYCASAIYELKTITIISIVRLLYCKTVT*ISG 200
           TNY     Y     Y ++T+T++  +++ Y + +T + G
Sbjct: 35  TNYLFMGDYVDRGYYSVETVTLLVALKMRYPQRITILRG 73


>At2g42500.1 68415.m05258 serine/threonine protein phosphatase
           PP2A-3 catalytic subunit (PP2A3) identical to SP|Q07100
           Serine/threonine protein phosphatase PP2A-3 catalytic
           subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains
           Pfam profile PF00149: Ser/Thr protein phosphatase
          Length = 313

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 84  TNYFLFNAYCASAIYELKTITIISIVRLLYCKTVT*ISG 200
           TNY     Y     Y ++T+T++  +++ Y + +T + G
Sbjct: 82  TNYLFMGDYVDRGYYSVETVTLLVALKMRYPQRITILRG 120


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 12  NIYFNMFYLFIICYKYVFRYFL 77
           N+ + +F++ ++  K++F YFL
Sbjct: 478 NVKYTLFWIIVLATKFIFSYFL 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,168
Number of Sequences: 28952
Number of extensions: 235370
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)