Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0958
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.10 
UniRef50_Q8EZV0 Cluster: Putative uncharacterized protein; n=4; ...    33   6.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 43  AGWWYLPVRTYKRSYHQ*LRKLKFCG 120
           A WWYLP RT+KRSYH+   +  +CG
Sbjct: 569 AEWWYLPARTHKRSYHR--YQCSYCG 592


>UniRef50_Q8EZV0 Cluster: Putative uncharacterized protein; n=4;
           Leptospira|Rep: Putative uncharacterized protein -
           Leptospira interrogans
          Length = 531

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 669 NTWDFNSTRGQRYTVAYR*VLSTSHLGLYXHIFFEMCLKEGLFCF----FLWCFFYIIVF 502
           N W FNS  G RY   Y  V + +    + ++ F   LK GLF +    FL   F+I +F
Sbjct: 247 NQWFFNSPLGPRYNANYGSVGNPNLFKNFINLLFYGNLKLGLFGYSPFLFLGVLFFIFIF 306


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,786,060
Number of Sequences: 1657284
Number of extensions: 13750301
Number of successful extensions: 29345
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29336
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)