Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0958
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0295 - 29051375-29052135,29053368-29053533                       30   1.5  
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644...    30   2.0  
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    28   6.2  

>05_07_0295 - 29051375-29052135,29053368-29053533
          Length = 308

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 273 NTLLEPCFKEDR*DSVNTEQVHFKVSTYLRRKNEMLAVTTVKIYE 407
           N+   PCF E   D  N  +V  K+   L+R++EM+A    +I +
Sbjct: 117 NSSGSPCFSESGSDIYNKREVIQKLRQQLKRRDEMIAEMQAQIVD 161


>07_03_0941 -
           22763733-22763970,22764077-22764213,22764282-22764470,
           22765238-22765756,22766319-22767357,22767665-22767759,
           22768253-22768357
          Length = 773

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = -2

Query: 352 VETLK*TCSVFTESYLSSLKQGSSRVFYAITQLTMDSDS 236
           VE    TCS++TE+Y ++L   S  VF AI++++ +S S
Sbjct: 245 VEAFLPTCSIYTETYSATL---SKIVFSAISKVSKESSS 280


>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 573 IYGDTIPGGL*RALNGRQRCTSG 641
           + GD+ PGG    L GRQRC+ G
Sbjct: 24  VCGDSFPGGN-NGLRGRQRCSGG 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,394
Number of Sequences: 37544
Number of extensions: 355435
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)