Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0958
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 30   2.1  
SB_35181| Best HMM Match : Tetraspannin (HMM E-Value=0.49)             29   4.8  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 230 KLTITIHGKLSNCIKHSTGTLFQGRQIGLC 319
           KL I +H  L  CI+H +G +FQ     +C
Sbjct: 276 KLPIVVHTSLVYCIQHFSGVIFQFSYYRIC 305


>SB_35181| Best HMM Match : Tetraspannin (HMM E-Value=0.49)
          Length = 230

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 499 TKNDDVKETPKEETEKALLKTHFKEYMXIQSQVACREHLTVGNGVPLAP 645
           T  D + +T     ++ L KTHF   M   S  +C     + NG+ L P
Sbjct: 168 TSLDQIMKTSTSLHKRLLHKTHFGRRMAAGSTTSCAITSLLSNGIDLYP 216


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 230  KLTITIHGKLSNCIKHSTGTLFQ 298
            KL I +H  L  CI+H +G +FQ
Sbjct: 1559 KLPIVVHTSLVYCIQHFSGVIFQ 1581


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 261  LNLPWIVIVNFSIEVVWAC*GIKEDI 184
            LNL W++IVNF + ++ +   +KE+I
Sbjct: 1137 LNLLWMIIVNFQVNILLSEEKLKEEI 1162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,131
Number of Sequences: 59808
Number of extensions: 427803
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)