Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0958
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    29   2.2  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    29   3.9  
At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot...    27   9.0  
At3g43250.1 68416.m04565 cell cycle control protein-related cont...    27   9.0  
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi...    27   9.0  

>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +1

Query: 484 NSNHRTKNDDVKETPKEETEKALLKTHFKEYMXIQSQVACR----EHLTVGNGVPLA 642
           N+NH + +++ K    EE EK +L  +F++ +   +  AC+    E +  G  VPL+
Sbjct: 6   NTNHTSDDNNDKNHTNEEQEKIILNPNFEDGLNNWTGRACKIVLHESMDSGKIVPLS 62


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
           contains Pfam PF02138: Beige/BEACH domain; similar to
           LBA isoform gamma (GI:10257405) [Mus musculus]; similar
           to beige-like protein (CDC4L) - Homo sapiens; similar to
           Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
           protein homolog implicated in neuronal membrane traffic
           (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 609 LSTSHLGLYXHIFFEMCLKEGLFC 538
           LS + LG Y H+ +  CL  G FC
Sbjct: 262 LSDAELGGYIHLLYHPCLLSGRFC 285


>At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein
           similar to lipase [Arabidopsis thaliana] GI:1145627;
           contains Pfam profile:PF00657 Lipase/Acylhydrolase with
           GDSL-like motif
          Length = 323

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 233 LTITIHGKLSNCIKHSTGTLFQGRQIGLCKYRTSSFQ 343
           L  T HG  S+C+KHS   LF   +IG   Y    FQ
Sbjct: 106 LRSTCHGSSSDCLKHS---LFMVGEIGGNDYNYGFFQ 139


>At3g43250.1 68416.m04565 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 249

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 672 CNTWDFNSTRGQRYTVAYR*VLSTSHLGLYXHIFFEMCLK 553
           CNT     + G ++      V++ ++LGL  H F+  C K
Sbjct: 43  CNTCGNYMSEGTKFNCRQEDVITETYLGLKIHRFYIKCTK 82


>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1052

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 435 H*MYNISFLFHKFLRLSRLTFHFYGVGK 352
           H +Y+ + L H F R SRL+F    +GK
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGK 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,835
Number of Sequences: 28952
Number of extensions: 305323
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)