Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0957
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12640.1 68414.m01468 membrane bound O-acyl transferase (MBOA...    30   1.2  
At1g28270.1 68414.m03470 rapid alkalinization factor (RALF) fami...    29   3.7  

>At1g12640.1 68414.m01468 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to porcupine from [Xenopus
           laevis] GI:6714514, GI:6714520, GI:6714518, GI:6714516;
           contains Pfam profile PF03062: MBOAT family
          Length = 462

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 150 NALFTKLRNVYILFNIAVITMYKTCKHINSTYYVTSKCITGLICLNILVP 1
           N L+T L   Y      V+++++T     S YY+ +    GLI L+ +VP
Sbjct: 401 NFLYTVLVLNYSAVGFMVLSLHETLTAYGSVYYIGTIIPVGLILLSYVVP 450


>At1g28270.1 68414.m03470 rapid alkalinization factor (RALF) family
           protein similar to RALF precursor [Nicotiana tabacum]
           GI:16566316
          Length = 110

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 117 ILFNIAVITMYKTCKHINSTYYVTSKCITGLICL 16
           ++F + ++ M    K +N+TY +T  CI G  C+
Sbjct: 7   LIFGLLILAM--VAKSVNATYPLTKSCINGQGCI 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,064
Number of Sequences: 28952
Number of extensions: 181039
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)