Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0955
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.6  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   5.9  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   5.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   7.8  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -2

Query: 267 VISLVPPYSRNSLLPRGSVGR*LWSSSIASTPHDASPHFNFRIKESCSAETCTGSLKRSQ 88
           V S  P Y+ +S+LP  SV     SS+ ++T   AS      +  + +    +     S 
Sbjct: 516 VSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNST 575

Query: 87  ITDSVHG 67
           IT S  G
Sbjct: 576 ITSSASG 582


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 195 STITGPRCPSATGSCASTAALAISQTAH*LTSSSNGLVVGPPNT 326
           +T+T    PSA  +  S ++ +   + H +TS++   +V PP+T
Sbjct: 32  TTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPST 75


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 396 TFAYCGYLDKRKQSYANMSY 337
           TF    YLDKR+++Y   SY
Sbjct: 48  TFYTANYLDKRRKNYPKSSY 67


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 61   CQRPWVRPVSCLG 23
            C RPWV  ++C+G
Sbjct: 1377 CSRPWVAEIACVG 1389


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -2

Query: 297 YLRTSVNVQFVISLVPPYSRNSLLPRGSVGR*LWSSSIASTPHDASPHFNFRIKESCSAE 118
           YLR +V+        PP+ R+      S+ +   +S        A+ H  + +  +CS  
Sbjct: 182 YLRPNVSRSRSSGNAPPFLRSRSSSSYSINKKKGTSG-----GQATRHLTYALSRTCSQS 236

Query: 117 TCTGSLKRSQITD 79
           + T SL  S +TD
Sbjct: 237 SNTTSLLESCLTD 249


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 103 FEEEPNHRLRARWCCQRPWV 44
           F+++PN R++ R   + PWV
Sbjct: 240 FQKDPNLRIKTRKLLKHPWV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,515
Number of Sequences: 5004
Number of extensions: 64369
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)