Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0955
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 53 3e-07
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 52 4e-07
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 52 6e-07
08_02_0714 + 20343864-20344385,20344928-20345098,20345933-203459... 49 3e-06
08_02_0711 + 20305341-20305859,20306278-20306448,20306995-203070... 49 4e-06
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 49 4e-06
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 47 2e-05
11_01_0330 + 2472195-2472743 46 4e-05
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 45 5e-05
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 41 8e-04
04_04_0705 - 27406405-27406424,27406425-27409260 31 0.66
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917... 30 1.5
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 30 2.0
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/69 (42%), Positives = 39/69 (56%)
Frame = +2
Query: 35 YWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHNYRPT 214
Y+ Y GSLTTPPCTE+VIW +F E +++ EQ + +R G HN RPT
Sbjct: 203 YFRYVGSLTTPPCTENVIWNIFGEIREMTKEQAAALRAPLHG---------SYRHNRRPT 253
Query: 215 LPLGNRELR 241
PL R ++
Sbjct: 254 QPLNGRTVQ 262
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMR 145
DP+ + + Y+ Y GSLTTPPCTE VIW + + S EQ+ L++
Sbjct: 215 DPSTWVDKTSGYYRYDGSLTTPPCTEGVIWTIMSKIGDASKEQIDLLK 262
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVE 181
DP + Y+ Y GSLTTPPCT+ V+W + K VS QL L+R+ E
Sbjct: 195 DPRGARGRASVYYRYMGSLTTPPCTQGVVWTIVKRVRTVSRYQLDLLREAVHDEMENNAR 254
Query: 182 AMELLHN 202
++ ++N
Sbjct: 255 PLQAVNN 261
>08_02_0714 +
20343864-20344385,20344928-20345098,20345933-20345986,
20346300-20346386
Length = 277
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMR 145
DP Y+ Y GSLTTPPCTE VIW + ++ VS QL+L++
Sbjct: 197 DPNVAKEHDIVYYRYMGSLTTPPCTEGVIWTIVRKVHTVSLSQLALLK 244
>08_02_0711 +
20305341-20305859,20306278-20306448,20306995-20307048,
20307389-20307475
Length = 276
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMR 145
DP T Y+ Y GS TTPPCTE VIW + ++ VS Q++L++
Sbjct: 196 DPNVAKGKDTVYYRYMGSFTTPPCTEGVIWTVVRKVHTVSLSQITLLK 243
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMR 145
DP T Y+ Y GS TTPPCTE VIW + ++ VS Q++L++
Sbjct: 196 DPNVAKGQDTVYYRYMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLK 243
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKE----PVQVSAEQLSLMRK 148
DP Y+ Y GSLTTPPCTE VIW +FK V+ QL L+R+
Sbjct: 192 DPQLAKSPDAVYYRYMGSLTTPPCTEGVIWTVFKRVFLLAQTVAQYQLDLLRE 244
>11_01_0330 + 2472195-2472743
Length = 182
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 32 AYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKL 151
+Y+ Y GSLT PPCTE V W + + Q+S EQ++L+ L
Sbjct: 112 SYFRYAGSLTAPPCTEDVFWSVLGKIRQISQEQVALITAL 151
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 32 AYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLM 142
+Y+ Y GSLTTPPC E+V+W + + ++S EQL L+
Sbjct: 386 SYFRYGGSLTTPPCGENVVWSVLGKVREISQEQLHLL 422
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 35 YWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLS-LMRKLKCG 160
Y+ Y GSLTTPPC E+VIW + P +++ +Q + LM L G
Sbjct: 202 YYRYVGSLTTPPCAENVIWNIPAMPREMTPQQAADLMAPLDEG 244
>04_04_0705 - 27406405-27406424,27406425-27409260
Length = 951
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 516 LQKWTGSLGTFLQIRLNYKLNLVTDHVWFANYLPRAFYI-MTFAYCG 379
L W GSL +Q+RL + NL+ D + + LPR ++ + AY G
Sbjct: 761 LPSWFGSLNNLMQLRL-HSSNLMEDSLGLLSSLPRLLHLSLVNAYSG 806
>07_03_0398 -
17690979-17690998,17691034-17691446,17691709-17691764,
17691922-17692054,17694244-17694403,17694862-17694955,
17695791-17695928,17696017-17696174,17696729-17696810,
17697055-17697151,17698703-17698824,17699833-17699910,
17700437-17700565,17701301-17701531
Length = 636
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 71 CTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHNYR 208
C + WL+F EP+ + E L L + + GV+ ++ Y+
Sbjct: 198 CNSQLFWLMFFEPLSIGFETLQLFDIWQRHQMDSGVDYLDFQKTYK 243
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 134 SLMRKLKCGEASCGVEAMELLHNYRPTLP-LGNRELREYGGTSDITNCTLTDVLK*RARC 310
+LM KL+C A+EL+H Y +P G++E+ S + C D+++ A+C
Sbjct: 187 ALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFL--YSALNTCDPGDIMETIAKC 244
Query: 311 GSTK 322
+K
Sbjct: 245 KKSK 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,846,322
Number of Sequences: 37544
Number of extensions: 421098
Number of successful extensions: 1191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -