Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0955
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0) 58 7e-09
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15) 54 8e-08
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 54 1e-07
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 33 0.29
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) 30 1.6
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 3.6
SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91) 28 6.3
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +2
Query: 5 PAKL---LPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCG 175
PAKL LP+ ++ Y GSLTTP C ESV W + P+ VS QL+++R LK + G
Sbjct: 605 PAKLGDLLPSNKNFYRYQGSLTTPGCQESVTWSVMANPITVSEAQLAILRGLKQKD---G 661
Query: 176 VEAMELLHNYRPTLPLGNRELR 241
V ++ N+R T+PL R ++
Sbjct: 662 VAVIQ--DNFRNTMPLNGRAVK 681
>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
Length = 291
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 KLLPTKTA-YWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAM 187
K++PT T ++ Y GSLTTPPC E+V W++ K+ +S +QL R + + +
Sbjct: 211 KIIPTDTEKFYRYNGSLTTPPCFETVKWIVLKKTASISEKQLRQFRSV-FSTSRQATKPN 269
Query: 188 ELLHNYRPTLPLGNRELRE 244
L+ N+RPT L R +R+
Sbjct: 270 SLVDNFRPTQSLNGRIIRK 288
>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
Length = 338
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 35 YWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHNYRPT 214
Y++Y GS T P C ESV W++ K+PV + ++++ +R+L E+S G +L N+RP
Sbjct: 176 YYSYKGSQTAPACHESVRWIIVKQPVDIYRDEMAYLRRL---ESSSGKNG-KLCDNFRPI 231
Query: 215 L-PLGNRELRE 244
L PL R + E
Sbjct: 232 LYPLNGRTVYE 242
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 14 LLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMEL 193
LLP+ T ++ Y GSLTTPPC ESV W + K +S +QL +R + GV ++
Sbjct: 734 LLPSNTDFFRYKGSLTTPPCYESVTWTVMKTKTTISHDQLMKLRSIM---EKDGVH--KI 788
Query: 194 LHNYRPTL-PLGNRELR 241
NYR L PL R ++
Sbjct: 789 TDNYRHILQPLNGRTVK 805
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 174 PHDASPHFNFRIKESCSAETCTGSLKRSQITDSVHG 67
PHDA+ +F F++ E CSA+T S K + + V G
Sbjct: 145 PHDATRYFVFKMAECCSADTAWESGKSNYLPIHVSG 180
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVE 181
DP LP + P T C L ++PVQV+ LS L G+ S +
Sbjct: 617 DPRARLPARFCDHAMPAFAT---CGGKAFLCLLRKPVQVTLHNLSTKLWLLRGKPSAEIS 673
Query: 182 AMELLHNYRPTL 217
++ HN + TL
Sbjct: 674 SVFKYHNTKQTL 685
>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
Length = 1709
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 258 LVPPYSRNSLLPRGSVGR*LWSSSIASTPHDASPHFNFRIKESCSAETCTGS 103
LV PY LLP G +W ++ +F++K SC +ETC S
Sbjct: 435 LVIPYYNKGLLP----GNVIWKLDLSKDRTAVYATTDFKVKLSCESETCRKS 482
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 14 LLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGE 163
++PT T GS+ + CT V WL V A+++ L+ L+ GE
Sbjct: 317 IMPTSNITQTRGGSVVSSTCTALVTWLP-NTTAPVQAKKIKLIVVLRMGE 365
>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 990
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -2
Query: 459 LNLVTDHVWFANYLPRAFYI 400
++LV++H+W +YL R+FY+
Sbjct: 472 VHLVSEHIWCDDYLVRSFYL 491
>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
Length = 571
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 95 LFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHNY 205
LFK+ +S + ++ KL+ G A V+ +E LHNY
Sbjct: 344 LFKQSEVLSLMRENVAYKLQHGHAKDAVDMLEKLHNY 380
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,366,892
Number of Sequences: 59808
Number of extensions: 501760
Number of successful extensions: 1266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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