Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0955
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 21  QPRQLTGRTQGL*QHHRARSR*FGSSSKNPY 113
           Q +QL   TQ   QH+   +    +SS +PY
Sbjct: 114 QQQQLAAETQQQQQHNNGYASPMSTSSYDPY 144


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 527 NIFIINISIQRYL*DLVYCL 586
           N+F+IN++I  +L  +++C+
Sbjct: 88  NLFVINLAISNFL--MMFCM 105


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 492 GTFLQIRLNYKLNLVTDHVWFANYLPRAFYIM 397
           G + ++ L++KL     +  F  YLP    +M
Sbjct: 226 GIYQRLSLSFKLQRNIGYFVFQTYLPSILIVM 257


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 336 KLLMCLVDPQRARYLRTS 283
           KL++CL+DP+    + +S
Sbjct: 88  KLVICLIDPRDVEIILSS 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,021
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)