Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0955
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08080.1 68414.m00884 carbonic anhydrase family protein simil... 52 5e-07
At5g04180.1 68418.m00406 carbonic anhydrase family protein simil... 49 3e-06
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 48 8e-06
At1g08065.1 68414.m00882 carbonic anhydrase family protein simil... 46 2e-05
At3g52720.1 68416.m05808 carbonic anhydrase family protein low s... 44 7e-05
At2g28210.1 68415.m03425 carbonic anhydrase family protein simil... 41 0.001
At4g21000.1 68417.m03039 carbonic anhydrase family protein simil... 38 0.008
At3g52720.2 68416.m05809 carbonic anhydrase family protein low s... 36 0.019
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 31 0.55
At3g08800.1 68416.m01022 expressed protein 31 0.96
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 29 2.2
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 29 2.2
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 29 2.9
At2g35530.1 68415.m04352 bZIP transcription factor family protei... 28 5.1
At4g03916.1 68417.m00552 hypothetical protein low similarity to ... 28 6.8
At1g32150.1 68414.m03955 bZIP transcription factor family protei... 28 6.8
>At1g08080.1 68414.m00884 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 275
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVE 181
DP K+ Y+ Y GSLTTPPCT++V W + ++ V+ +Q+ L+R +A+
Sbjct: 199 DPTKIKIGSRKYYRYTGSLTTPPCTQNVTWSVVRKVRTVTRKQVKLLRVAVHDDANSNAR 258
Query: 182 AME-----LLHNYRP 211
++ ++H YRP
Sbjct: 259 PVQPTNKRIVHLYRP 273
>At5g04180.1 68418.m00406 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 277
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/77 (37%), Positives = 39/77 (50%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVE 181
DP + T ++ Y GSLTTPPCTE V+W + + VS EQ+ ++ + G G E
Sbjct: 186 DPREFGWDLTKFYEYRGSLTTPPCTEDVMWTIINKVGTVSREQIDVLTDARRG----GYE 241
Query: 182 AMELLHNYRPTLPLGNR 232
N RP PL R
Sbjct: 242 -----KNARPAQPLNGR 253
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRK 148
DP ++ ++ Y GSLT PPCTE VIW + K +S EQ++ +R+
Sbjct: 191 DPREIRFQTRKFYRYIGSLTVPPCTEGVIWTVVKRVNTISMEQITALRQ 239
>At1g08065.1 68414.m00882 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 263
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 35 YWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMR 145
Y+ + GSLTTPPC+E+VIW + KE V+ +QL ++R
Sbjct: 193 YYRFIGSLTTPPCSENVIWTISKEMRTVTLKQLIMLR 229
>At3g52720.1 68416.m05808 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 284
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 35 YWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMR 145
Y+ Y GSLTTPPC+E+V W + + +S EQ+ L+R
Sbjct: 204 YYRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLR 240
>At2g28210.1 68415.m03425 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 217
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKE 106
DP + ++ Y GSLTTPPCT++VIW + K+
Sbjct: 171 DPRDIKIGSRKFYRYIGSLTTPPCTQNVIWTVVKK 205
>At4g21000.1 68417.m03039 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 260
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 2 DPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFK 103
DP + ++ Y GSLT PPCTE VIW + K
Sbjct: 192 DPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVQK 225
>At3g52720.2 68416.m05809 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 230
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 35 YWTYPGSLTTPPCTESVIWLL 97
Y+ Y GSLTTPPC+E+V W +
Sbjct: 204 YYRYIGSLTTPPCSENVSWTI 224
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 31.5 bits (68), Expect = 0.55
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = -2
Query: 354 YANMSYKLLMCLVDPQRARYLRTSVNVQFVISLVPPYSRNSLLPRGSVGR*LWSSSIAST 175
YA+ S KL P R T+ N + L PPY+ S+ P G+ S S+ T
Sbjct: 67 YASPSVKLTPPYASPS-VRPAGTTPNASPSVKLTPPYASPSMRPAGTPNA---SPSVKLT 122
Query: 174 PHDASP 157
P ASP
Sbjct: 123 PPYASP 128
>At3g08800.1 68416.m01022 expressed protein
Length = 936
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +2
Query: 146 KLKCGEA-SCGVEAMELLHNYRPTLPLG-----NRELREYGGTSDITNCTLTDVLK 295
+L C E S + +EL H + T P + L E+G + DI +C L D++K
Sbjct: 732 RLSCMEKLSSTISQLELHHEQQCTKPSDFLTETKKSLEEFGSSDDINSCRLLDLIK 787
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 220 GQRGPVIVEQLHRLNAA*RFTAFQLPHQRELFSG-NLYGFFE 98
G+RGPV++E H + FT ++P + G + GFFE
Sbjct: 35 GERGPVLLEDYHLIEKVANFTRERIPERVVHARGISAKGFFE 76
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 220 GQRGPVIVEQLHRLNAA*RFTAFQLPHQRELFSG-NLYGFFE 98
G+RGPV++E H + FT ++P + G + GFFE
Sbjct: 35 GERGPVLLEDYHLIEKVANFTRERIPERVVHARGISAKGFFE 76
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 582 VYNCAMCSNCNVT*TFVCTLINVFRH 659
++ CA+C+ NV FVC + V RH
Sbjct: 51 LWRCAICTYDNVETMFVCDICGVLRH 76
>At2g35530.1 68415.m04352 bZIP transcription factor family protein
contains Pfam domain PF00170: bZIP transcription factor;
similar to G-Box binding protein 2 (GI:5381313)
[Catharanthus roseus].
Length = 409
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 240 ASTAALAISQTAH*LTSSSNGLVVGPPNTLTTCMTYW 350
A T L +SQT + ++ G V GPP L M YW
Sbjct: 228 AGTPILPVSQTVPIMPMTAAG-VPGPPTNLNIGMDYW 263
>At4g03916.1 68417.m00552 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 251
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 267 VISLVPPYSRNSLLPRGSVGR*LWSSSIASTPHDASPHFNFRIKE 133
+I + PP + ++ G +G + S I TP D FN R K+
Sbjct: 152 MIQMTPPILQAVIITGGRIGDKVLISKILITPSDTKLPFNMRRKQ 196
>At1g32150.1 68414.m03955 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 389
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 222 SATGSCASTAALAISQTAH*LTSSSNGLVVGPPNTLTTCMTYW 350
SA G + + L ++QT + S+ G V GPP L M YW
Sbjct: 223 SAHGPPRNGSNLPVNQTVAIMPVSATG-VPGPPTNLNIGMDYW 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,793
Number of Sequences: 28952
Number of extensions: 331920
Number of successful extensions: 797
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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