Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0954
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000069ED82 Cluster: UPI000069ED82 related cluster; n...    39   0.11 
UniRef50_Q6CB32 Cluster: Similarity; n=2; root|Rep: Similarity -...    36   0.79 
UniRef50_UPI00015A52A9 Cluster: UPI00015A52A9 related cluster; n...    36   1.0  
UniRef50_Q21094 Cluster: Putative uncharacterized protein twk-14...    35   1.4  
UniRef50_P24896 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    35   1.4  
UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n...    35   1.8  
UniRef50_Q54E50 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q697H2 Cluster: NADH dehydrogenase subunit 6; n=1; Aleu...    33   7.3  
UniRef50_A0Q0I3 Cluster: Accessory gene regulator protein C, put...    32   9.7  

>UniRef50_UPI000069ED82 Cluster: UPI000069ED82 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI000069ED82 UniRef100 entry -
           Xenopus tropicalis
          Length = 250

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 254 FIDLFSVYIMYTIIWIGLNRFFLFLCRCT*YCPLKPYHFHYLIVMYPRYIFVSCYFPLY 78
           +I L+ +   Y  ++  ++R+       + Y PL P  FHY I +YP Y  +S Y PLY
Sbjct: 97  YISLYPIISCYIPLYPTISRYIPLYPSISHYIPLYPTIFHY-IPLYPVYPTISHYIPLY 154


>UniRef50_Q6CB32 Cluster: Similarity; n=2; root|Rep: Similarity -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 281

 Score = 35.9 bits (79), Expect = 0.79
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = -2

Query: 314 FLIISLDVFLFVLCTRLEFGFIDLFSVYIMYTIIWIGLNRFFLFLCRCT*YCPLKPYHFH 135
           F+ I + +F+F+      F FI +F  YI Y + +I    +F+F      Y     ++  
Sbjct: 60  FIFIFIFIFIFIFIFIFIFIFIFIFIFYIFYILYFIFYILYFIF------YILYFIFYIL 113

Query: 134 YLIVMYPRYIFVSCYFPLYAHDLYN 60
           Y I     +IF + YF LY    Y+
Sbjct: 114 YFIFYILYFIFYTLYFILYIFISYS 138


>UniRef50_UPI00015A52A9 Cluster: UPI00015A52A9 related cluster; n=2;
            Danio rerio|Rep: UPI00015A52A9 UniRef100 entry - Danio
            rerio
          Length = 2279

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 18/74 (24%), Positives = 31/74 (41%)
 Frame = -1

Query: 300  FGCIFICTLYSFRVWLYRSF*CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVPFSLFDSY 121
            F C      Y F  ++Y    CL Y++ Y+  L SIF + +    I       + L   Y
Sbjct: 885  FNCYLFIIYYIFSCYIYNYLICLLYLFIYLLCLLSIFIMFIIFMFIYCVNLFIYLLCCIY 944

Query: 120  VPSIYFCFMLFSII 79
            +  ++  F  +S +
Sbjct: 945  LSCLFIIFTYYSYV 958


>UniRef50_Q21094 Cluster: Putative uncharacterized protein twk-14;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein twk-14 - Caenorhabditis elegans
          Length = 383

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -1

Query: 237 CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVP-FSLFDS--YVPSIYFCFMLFSII 79
           C  ++ N+   +  +FF+L  M L+L T +   +S+ ++  Y+ S+YFCF+ F+ I
Sbjct: 219 CGGHMDNWRPSVYKVFFILFSMCLVLITASAGIYSVVENWNYIDSLYFCFISFATI 274


>UniRef50_P24896 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=20; Chromadorea|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Caenorhabditis elegans
          Length = 527

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
 Frame = -1

Query: 402 FCTC-LIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYSFRVW--LYRSF*CL 232
           FC C LI +      + I     SN    FFS  FF  +F+   YSFR+W   + SF  +
Sbjct: 331 FCLCGLIFSSGAVSKDFILELFFSNNYMMFFSLMFFVSVFLTFGYSFRLWKSFFLSFNKV 390

Query: 231 --HY----VYNYMDRLKSIFFVLV*MYLILSTKTVP--FSLFDSYVPSIYFCFMLF 88
             HY      N++  +  IF +    ++  +   +P  F   D + P ++   M+F
Sbjct: 391 MNHYSSTVFMNFLSLVLVIFSISFLWWMNFNLLNIPSLFLYVDFFGPLVFLFMMIF 446


>UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A1716 UniRef100 entry -
           Xenopus tropicalis
          Length = 158

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
 Frame = -1

Query: 459 YTTDFSFRLLVDIFKDEISFCTCLIITIDVRLT-NCINYRQLSNEMS*FFSYYFFGCI-- 289
           Y    S+ L   I+   +  C  L +TI +RL   C      +N M  F  YY +  I  
Sbjct: 37  YLYALSYYLYATIYMRLLIICYYLYVTIYIRLLFICYYLYAATNYMLLFICYYLYATIYM 96

Query: 288 ---FIC-TLYSFRVWLYRSF*CLHYVYNYMDRLKSI--FFVLV*MYLILSTKTVPFSLF 130
              FIC  LY+  +++   F C +Y+Y  +  L  I  +++   +Y+     T+   LF
Sbjct: 97  HLLFICYYLYAATIYMRLLFICGYYLYATIYMLPFICGYYLYATIYMHYLYATIYMLLF 155


>UniRef50_Q54E50 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 62

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 333 NEMS*FFSYYFFGCIFICTLY-SFRVWLYRSF*CLHYVYNYMDRLKSIFFV 184
           NE   F+ YYF+G  FI T+Y  F ++LY+    L     +   +K +FF+
Sbjct: 2   NEFGFFYYYYFWG--FIITIYKGFFIFLYKGLLFLKNKNGFFCSMKILFFI 50


>UniRef50_Q697H2 Cluster: NADH dehydrogenase subunit 6; n=1;
           Aleurochiton aceris|Rep: NADH dehydrogenase subunit 6 -
           Aleurochiton aceris
          Length = 143

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 314 FLIISLDVFLFVLCTRLEFGFIDLFSVYIMYTIIWIGLNRFFLFLC 177
           FLI+ L +FLF +   + F     F  Y+++ +   GL   FL+LC
Sbjct: 7   FLILLLVLFLFYVVLLMVFYMNSYFYSYLVFLLFMSGLMVMFLYLC 52


>UniRef50_A0Q0I3 Cluster: Accessory gene regulator protein C,
           putative; n=1; Clostridium novyi NT|Rep: Accessory gene
           regulator protein C, putative - Clostridium novyi
           (strain NT)
          Length = 437

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
 Frame = -1

Query: 441 FRLLVDIFKDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFS--YYFFGCIFICTLYS 268
           F L++ IF +++     L   +D+ L+  I     SN +  F S        IFI  ++S
Sbjct: 87  FTLIIMIFSEQL-IAIILSNLLDLNLSYII-----SNNVLKFCSNILIIINNIFIINIHS 140

Query: 267 FRVWLYRSF*CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVPFSLFDSYVPSIYFCFMLF 88
             +W Y       Y  NY + +   FF+L+  +++L +  + +  F+SY+ +  F F+  
Sbjct: 141 M-LWKYIKD---KYFLNYCNSIIKNFFILMLTFILLISYLLLYECFNSYLKNKTFIFIFI 196

Query: 87  SII 79
             I
Sbjct: 197 LCI 199


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,603,450
Number of Sequences: 1657284
Number of extensions: 9637372
Number of successful extensions: 21594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21570
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)