Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0954
(624 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 28 0.073
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 22 4.8
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 22 4.8
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 22 4.8
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 22 4.8
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.4
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.4
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.4
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.4
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 27.9 bits (59), Expect = 0.073
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = -2
Query: 314 FLIISLDVFLFVLCTRLEFGFIDLFSVYIMYTIIWIGLNRFFLFLCRCT*YCPLKPYHFH 135
F+I ++ + LF+LC F +F++++++ +I N LFL C Y L
Sbjct: 153 FIIFTVHL-LFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHLLFLL-CLDYFTLHLLFLP 210
Query: 134 YLIVMYPRYIFVSCYFPLY 78
+ Y +I + + Y
Sbjct: 211 CIYYFYSAFIIFTIHLLFY 229
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 147 VPFSLFDSYVPSIYFCFMLFSII 79
VP ++ +PS+Y +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 147 VPFSLFDSYVPSIYFCFMLFSII 79
VP ++ +PS+Y +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 147 VPFSLFDSYVPSIYFCFMLFSII 79
VP ++ +PS+Y +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 147 VPFSLFDSYVPSIYFCFMLFSII 79
VP ++ +PS+Y +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.4
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I + C +DV T I R L YYFF I C L S
Sbjct: 186 KNTIVYACCPEPYVDVTFTIKIRRRTL---------YYFFNLIVPCVLIS 226
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.4
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I + C +DV T I R L YYFF I C L S
Sbjct: 186 KNTIVYACCPEPYVDVTFTIKIRRRTL---------YYFFNLIVPCVLIS 226
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.4
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I + C +DV T I R L YYFF I C L S
Sbjct: 186 KNTIVYACCPEPYVDVTFTIKIRRRTL---------YYFFNLIVPCVLIS 226
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.4
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I + C +DV T I R L YYFF I C L S
Sbjct: 186 KNTIVYACCPEPYVDVTFTIKIRRRTL---------YYFFNLIVPCVLIS 226
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.4
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I + C +DV T I R L YYFF I C L S
Sbjct: 186 KNTIVYACCPEPYVDVTFTIKIRRRTL---------YYFFNLIVPCVLIS 226
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,413
Number of Sequences: 336
Number of extensions: 3224
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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