Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0954
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.55 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.3  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.1  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   6.7  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 245 LFSVYIMYTIIWIGLNRFFLFLCRCT*Y 162
           LF++ I+ ++I+I  N FF +LCRC  Y
Sbjct: 25  LFALVIILSVIFI--NFFFFYLCRCCVY 50


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 242  FSVYIMYTIIWIGLNRFFLFLCRCT*YCPLKPYH-FHYLIVMYPR 111
            F V + YT+  + L  F LFL  C+     KPY+ F Y   + PR
Sbjct: 1044 FEVKMAYTVRQLSLKVFLLFLKSCS-DVDFKPYNVFIYTAFVVPR 1087


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 483 N*LNIIIKYTTDFSFRLLVDIFKDEISFC 397
           N L I I+ T D SFR LV  F   + +C
Sbjct: 263 NTLGISIEVTKDMSFRTLVFNFLTSVYYC 291


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 38  YLN*KLINYINHVRIMENSMKQKYIE 115
           +LN K + +I+H+ I+++  KQ Y E
Sbjct: 256 FLNLKTVLFISHLDILKSITKQTYYE 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,359
Number of Sequences: 5004
Number of extensions: 46816
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)