Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0954
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    28   5.2  
07_03_0842 - 21952483-21954135,21957361-21958108,21958266-21958534     28   5.2  
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190           27   9.2  
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584     27   9.2  
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964     27   9.2  

>11_06_0361 -
           22711200-22712180,22712523-22712729,22715205-22715903,
           22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 315 FSYYFFGCIFICTLYSFRVWLY 250
           FSYY   C+F   L SFR+ LY
Sbjct: 312 FSYYHCVCMFFKELVSFRILLY 333


>07_03_0842 - 21952483-21954135,21957361-21958108,21958266-21958534
          Length = 889

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 457 IFYYNIKLIVFHSVQTIYIEQPMALYIAYSRQIIS 561
           IF+YN+  +++   +  YI+QP   Y+ Y   II+
Sbjct: 664 IFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIA 698


>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
          Length = 1218

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 273 YSFRVWLYRSF*CLHYVYNYMDRLKSIFF 187
           Y  +VW Y++  CL  ++ ++D ++++ F
Sbjct: 73  YKIKVWNYKTHRCLFTLHGHLDYIRTVQF 101


>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
          Length = 1218

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 273 YSFRVWLYRSF*CLHYVYNYMDRLKSIFF 187
           Y  +VW Y++  CL  ++ ++D ++++ F
Sbjct: 73  YKIKVWNYKTHRCLFTLHGHLDYIRTVQF 101


>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
          Length = 1218

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 273 YSFRVWLYRSF*CLHYVYNYMDRLKSIFF 187
           Y  +VW Y++  CL  ++ ++D ++++ F
Sbjct: 73  YKIKVWNYKTHRCLFTLHGHLDYIRTVQF 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,714
Number of Sequences: 37544
Number of extensions: 217525
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)