Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0954
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10507| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-09)                 30   1.3  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       27   9.4  
SB_27818| Best HMM Match : Ion_trans_2 (HMM E-Value=2.5e-33)           27   9.4  
SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_10507| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-09)
          Length = 386

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 155 LKPYHFHYLIVMYPRYIFVSCYFPLYAHDLYN 60
           +K Y    +  +Y  + FV CYFPL+   +YN
Sbjct: 172 IKKYRKSVISSLYIYFAFVMCYFPLFCALVYN 203


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 235 TLKRSIKP-NSKRVQSTNKNTSKEIIRKKS 321
           T   S+KP N+K+  S+NKN++K   RKKS
Sbjct: 593 TTTASLKPQNNKQKDSSNKNSTKATSRKKS 622


>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 393 CLIITIDVRLT-NCINYR-QLSNEMS*FFSYYFFGCIFICTLYSFRVWLYRSF*CLHYVY 220
           C++   ++RL   C+ Y  ++   ++     Y    I  C LY + +WL  +  C+ Y+Y
Sbjct: 182 CMLYLYEIRLVLACMQYLYEIRLVLACMLYLYEIWLILACMLYLYEIWLVPAS-CMQYLY 240



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
 Frame = -1

Query: 501 LYTMEYN*LNIIIKYTTDFSFRLLVDIFKDEISFC-TCLIITIDVRLT-NCINYRQLSNE 328
           LY  E   +   ++Y  +    L   ++  EI     C++   ++RL   C+ Y      
Sbjct: 67  LYLYEIRLVLACMQYLYEIRLVLACVLYLYEIRLVLACMLYLYEIRLVLGCMQYLYEIRL 126

Query: 327 MS*FFSY-YFFGCIFICTLYSFRVWLYRSF*CLHYVY 220
           +     Y Y    +  C LY + +WL  +  C+ Y+Y
Sbjct: 127 VLACMQYLYEIRLVLACMLYLYEIWLVPA--CMLYLY 161


>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 204 LKSIFFVLV*MYLILSTKTVPFSLFDS--YVPSIYFCFMLFSII 79
           +K+     + + LI+    V F L +   Y+ S+YFCF+  + I
Sbjct: 284 IKTAVLAFIILLLIIFLPAVGFHLIEKWEYIESVYFCFITLTTI 327


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 359 FVNLTSMVIIRQVQNDISSLKISTSNL 439
           F NLTS+V +R   N +SSL  S +NL
Sbjct: 399 FGNLTSLVELRLDSNQLSSLPASFANL 425


>SB_27818| Best HMM Match : Ion_trans_2 (HMM E-Value=2.5e-33)
          Length = 352

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 126 SYVPSIYFCFMLFSII 79
           +YV S+Y+CF++FS I
Sbjct: 121 NYVSSVYYCFIVFSTI 136


>SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
 Frame = -1

Query: 306 YFFGCIFICTLYSFRVWLYRSF*CLHYVYNY------MDRLKSIFFVLV*MYLILSTKTV 145
           Y    I  C LY + +WL  +  C+ Y+Y        M  L  I+ VL  M  +   + V
Sbjct: 57  YEIWLILACMLYLYEIWLILA--CMQYLYEIWLVLACMQYLYEIWLVLACMLYLYEIRLV 114

Query: 144 ---PFSLFDSYVPSI----YFCFMLFSIIRT*F 67
                 L++ Y   I    + CF+   +IR+ F
Sbjct: 115 LACMLYLYEGYRARIRNHGHSCFLCEIVIRSQF 147


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 353 IQFVNLTSMVIIRQVQNDISSLKISTSN 436
           I F N     II  + +DI+++KI+TSN
Sbjct: 265 INFTNSNINAIIININSDINAIKIATSN 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,811,256
Number of Sequences: 59808
Number of extensions: 305453
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)