Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0954
         (624 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024967-1|ABE01197.1|  604|Drosophila melanogaster IP15225p pro...    31   0.96 
AY051963-1|AAK93387.1|  448|Drosophila melanogaster LD43003p pro...    31   0.96 
AE014298-1624|AAS65315.1|  448|Drosophila melanogaster CG1745-PA...    31   0.96 
AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB...    31   0.96 

>BT024967-1|ABE01197.1|  604|Drosophila melanogaster IP15225p
           protein.
          Length = 604

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 238 LKRSIKPN--SKRVQSTNKNTSKEIIRKKSAHF 330
           LKRS KP   +KR+ S  +NT  +++++  AHF
Sbjct: 257 LKRSHKPKIKAKRLSSRGRNTDPDLVKRYGAHF 289


>AY051963-1|AAK93387.1|  448|Drosophila melanogaster LD43003p
           protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 238 LKRSIKPN--SKRVQSTNKNTSKEIIRKKSAHF 330
           LKRS KP   +KR+ S  +NT  +++++  AHF
Sbjct: 257 LKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHF 289


>AE014298-1624|AAS65315.1|  448|Drosophila melanogaster CG1745-PA,
           isoform A protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 238 LKRSIKPN--SKRVQSTNKNTSKEIIRKKSAHF 330
           LKRS KP   +KR+ S  +NT  +++++  AHF
Sbjct: 257 LKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHF 289


>AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB,
           isoform B protein.
          Length = 837

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 238 LKRSIKPN--SKRVQSTNKNTSKEIIRKKSAHF 330
           LKRS KP   +KR+ S  +NT  +++++  AHF
Sbjct: 257 LKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHF 289


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,432,104
Number of Sequences: 53049
Number of extensions: 428544
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)