Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0954
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical pr...    35   0.041
Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    28   6.2  
AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical
           protein K01D12.4 protein.
          Length = 383

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -1

Query: 237 CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVP-FSLFDS--YVPSIYFCFMLFSII 79
           C  ++ N+   +  +FF+L  M L+L T +   +S+ ++  Y+ S+YFCF+ F+ I
Sbjct: 219 CGGHMDNWRPSVYKVFFILFSMCLVLITASAGIYSVVENWNYIDSLYFCFISFATI 274


>Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 266 LEFGFIDLFSVYIMYTIIWIGLNRFFLFL 180
           + +GF+ L+  +  + I+WIGLN   LF+
Sbjct: 385 ISYGFVLLWHGFYHHNIVWIGLNILALFI 413


>Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 266 LEFGFIDLFSVYIMYTIIWIGLNRFFLFL 180
           + +GF+ L+  +  + I+WIGLN   LF+
Sbjct: 385 ISYGFVLLWHGFYHHNIVWIGLNILALFI 413


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 357 CINYRQLSNEMS*FFSYYFFGCIFICTLYSFRVWLYRSF 241
           C+    + NE    F +++F  + + T   F +W++R F
Sbjct: 252 CVLMVNMFNEKIFIFLWFWFAFLLVATAGDFVIWVWRRF 290


>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = -1

Query: 315 FSYYFFGCIFICTLYSFRVWLYRSF*CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVPFS 136
           F++Y + C F CTL  FRV + ++   +    N+ +  K     +      L+ K   F 
Sbjct: 183 FTFYRYWCCFFCTL--FRVKIEKTHTKISISDNFRENRKKNCLKIFQKKFFLA-KNFYFQ 239

Query: 135 LFDSYVPSIYFCFMLFS 85
           +F+ ++ + Y   ++++
Sbjct: 240 IFNFFIANQYLITLIYT 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,705
Number of Sequences: 27780
Number of extensions: 251000
Number of successful extensions: 562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)