Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0954
(624 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 7.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.8
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 9.8
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.4 bits (43), Expect = 7.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 522 GLFNIDGLYTMEYN*LNIIIKYTTDFSFRLLVDIFKDEISFCTCLIITIDVRLTNCIN-Y 346
G+ +I G T+ + III TD R+ D+ S + + IDV NC N Y
Sbjct: 129 GVDDILGNNTVIHQPRIIIIDLKTDKILRIYPLKSSDQTSDSFFVDLVIDVDPNNCDNTY 188
Query: 345 RQLSN 331
+S+
Sbjct: 189 AYISD 193
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 169 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 209
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 169 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 209
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 169 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 209
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 169 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 209
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 169 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 209
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 169 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 209
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 237 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 277
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 417 KDEISFCTCLIITIDVRLTNCINYRQLSNEMS*FFSYYFFGCIFICTLYS 268
K+ I++ C +DV T I R L YYFF I C L S
Sbjct: 237 KNTITYQCCPEPYVDVTFTIQIRRRTL---------YYFFNLIVPCVLIS 277
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 164 IKYIYTRTKKIDLSRS 211
IKY +T KK+ L RS
Sbjct: 68 IKYSHTHEKKLVLERS 83
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,226
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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