Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0953
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.41 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   3.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.8  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   5.1  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 537 GRSVRASSLFASWRKGGCAARRLSWVTPGFSQSRRCKTTAS 415
           G S+   S   SW  GG +A +++   P +  S   ++T++
Sbjct: 220 GNSMSVDSSVQSWLSGGASASKVTLSVPFYGHSWYLQSTSN 260


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 103 CPPVPGRADYIHHLADLLAEASGTIPANASILD 201
           CP  P   +Y HHL   L   +G+ P   +  D
Sbjct: 233 CPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCD 265


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 106 PPVPGRADYIHHLADLLAEASGTIPANASILDIGVG 213
           PPV   ++ + +LAD+    +      +S+   G G
Sbjct: 120 PPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSG 155


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 106 PPVPGRADYIHHLADLLAEASGTIPANASILDIGVG 213
           PPV   ++ + +LAD+    +      +S+   G G
Sbjct: 120 PPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSG 155


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 210 NADIQNAGIRWNCSACFCQ 154
           N    N   RW C + +CQ
Sbjct: 17  NISALNGAWRWECKSNYCQ 35


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 294  LTPGCWFHYR 265
            L P CW+H R
Sbjct: 1554 LDPACWYHLR 1563


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 106 PPVPGRADYIHHLADLLAEASGTIPANASILDIGVG 213
           PPV   ++ + +LAD+    +      +S+   G G
Sbjct: 120 PPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSG 155


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 131 IFITLPIYWQKQAEQFQRMPAFWI 202
           I  +LP  +  + +Q Q MP  WI
Sbjct: 173 ILFSLPTVFLFEEKQVQSMPQCWI 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,149
Number of Sequences: 336
Number of extensions: 3692
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)