Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0953
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 61 2e-10
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 31 0.19
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 28 1.0
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 28 1.0
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 4.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 5.5
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 7.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 9.5
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 9.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 9.5
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 9.5
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASI-LDIGVGANCIYPLIGVHEY 252
+ P+ LCP VP RA YI ++ DLL+ SG I LDIG GA+CIYPL+G Y
Sbjct: 41 EFPENRLCPMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLDIGTGASCIYPLLGCRMY 98
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 108 WAEKTVGDIPVRYGVKMGQQRLIERLHRQRI 16
WA+KT I GV + +Q++IE LH+ +
Sbjct: 195 WADKTTSCIYEHLGVTVEEQKMIENLHKHSV 225
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 157 PVNRQGDEYNPPGPVLVGRENRRGYPSSL 71
P+ RQ ++YN +LV ++ G+PS L
Sbjct: 467 PIARQYEDYNTLEFILVDKDGNNGFPSDL 495
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 151 LLAEASGTIPANASILDIGVGANCIYPLIGVHEY 252
+LAEASGT+P +++ VG G EY
Sbjct: 235 ILAEASGTVPGTVEVIEPAVGTVTTTTYSGSVEY 268
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 136 HHLADLLAEASGTIPANASILD 201
H LAEASGT+P +++
Sbjct: 122 HEFTTTLAEASGTVPGTVEVVE 143
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 265 VKRHHIHVRQSADKYSSHQRRYPECWHSLELFRLLLPV 152
++R H + +K S ++YP C+ L L LLL V
Sbjct: 207 IERRFDHAKNRLNKVSRKAKQYPRCFIILLLCALLLLV 244
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 516 SLFASWRKGGCAARRLSWVTPGFSQ 442
++ + WR G + R++W P F Q
Sbjct: 51 AITSEWRAGDASLMRVAWAHPSFGQ 75
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = -3
Query: 295 LNAWLL-VSLPVKRHHIHVRQSADKYSSHQRRYPECWHSLELFRLLLPVNRQGDEYNPP- 122
+N W L + + H HV+Q S Q + P W S E+ + + D+ P
Sbjct: 78 VNVWALRKEKMIPKKHSHVKQEKRFSKSLQLQDPNVWPSPEIAEKQVEDRKLSDDSQKPL 137
Query: 121 GPVLVGRE 98
P G+E
Sbjct: 138 APKANGKE 145
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 5.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 143 LPIYWQKQAEQFQRMP 190
+P+YWQ++ +FQ P
Sbjct: 49 IPLYWQQRGNEFQASP 64
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 370 PLSFCRRRRMARLSPGLELIIACALLNAWLLVS 272
PL RRM RL P L AL +AW L +
Sbjct: 256 PLGLDLLRRMLRLQPELRTTGQDALQHAWFLTA 288
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 593 KILTLTICHSPXRCATVGKGDRCGPLRYSPAGEKGDVL 480
KIL+ I S + A V + D +RY+P+ + G L
Sbjct: 159 KILSKQIAQSQPKSAVVQQRDDPVYIRYTPSNQMGQAL 196
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 60 FLRRS-ELGYPRRFSLPTSTGPGGLYSS 140
FL+ S ++G+P F +P GPG +SS
Sbjct: 180 FLKCSCKVGFPFSFIVPLDIGPGTYHSS 207
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 349 RRMARLSPGLELIIACALLNAWLLVSLPVKRHHIHVRQSADKYS 218
R++ L+P ++A + L + L S P H +R S K+S
Sbjct: 324 RKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIPKFS 367
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 74 RTGISPTVFSAHQYRAGRIIFITLPIYWQKQAEQFQRMPAFWISALVRTVFIR*LAYMN 250
R+ IS VFS + +R+ +++ I L + Q + +P F + + L Y N
Sbjct: 156 RSHISRQVFSKNSFRSDQLVKIPLSSFKLGQVYDERIVPLFGVDCGITVTESNLLVYFN 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,595
Number of Sequences: 5004
Number of extensions: 56692
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -