Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0953
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0159 - 1109249-1109280,1109334-1109397,1109524-1109627,111... 68 6e-12
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.4
07_01_0177 + 1247937-1249067 29 2.4
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 28 5.6
09_06_0060 + 20593519-20594667,20594898-20594927,20595237-20595326 28 7.5
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 28 7.5
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 28 7.5
05_04_0166 + 18664609-18664890 27 9.9
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 27 9.9
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 9.9
>02_01_0159 -
1109249-1109280,1109334-1109397,1109524-1109627,
1110270-1110373,1110450-1110840,1110956-1111161,
1111650-1111885
Length = 378
Score = 68.1 bits (159), Expect = 6e-12
Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 SVDFXXXXXXXXXXXXXXXHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP 180
S+DF H + V NW IPDG LCP VP R++YIH + DLL +S IP
Sbjct: 54 SIDFTDFAATRELTRVLLLHDHGV-NWWIPDGQLCPTVPNRSNYIHWIEDLL--SSDLIP 110
Query: 181 ----ANASI--LDIGVGANCIYPLIGVHEYG 255
+N ++ DIG GANCIYPL+G G
Sbjct: 111 PISSSNKTVRGFDIGTGANCIYPLLGASLLG 141
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 405 ITIHWPSFYNVV-TGKTLALPNLIALQH 485
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>07_01_0177 + 1247937-1249067
Length = 376
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 562 HXGAQLLG-RAIGAGLFAIRQLAKRGMCCKAI 470
H GA+ G AIGAGL A+R +++R M AI
Sbjct: 319 HEGARAGGDAAIGAGLCALRHMSERSMVIAAI 350
>03_05_0941 +
29008322-29009686,29009929-29010012,29010889-29011052,
29011208-29011233,29011494-29011583,29012135-29012229,
29012328-29012495
Length = 663
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +3
Query: 432 NVVTGKTLALPNLIALQHI-PLF 497
N +TG+ +ALP++I ++H+ P+F
Sbjct: 171 NPITGEQIALPSVITIEHVNPIF 193
>09_06_0060 + 20593519-20594667,20594898-20594927,20595237-20595326
Length = 422
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 606 REF*QNINAYNLPFAIXVRNCWEGRSVRASSLFASWRKGGCAARRLSW 463
RE +I YN + V C EGR + A +F R+ GCA +++
Sbjct: 254 REVSPDIVHYN---TVIVGMCREGRPLDACKVFRDMRESGCAPNAVAY 298
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 87 PRRFSLPTSTGPGGLYSSPCR-FTGRSKRNNSSECQHSGYRRWCE 218
P++ S G +S PC F+ ++ R NSS +H G CE
Sbjct: 197 PKKDSKGHPNQKAGTHSEPCSGFSDQTLRMNSSRNKHQGKEPSCE 241
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 88 PDG-FLCPPVPGRADYIHHLADLLAEASG 171
PDG F CP PG+ + L DLL A G
Sbjct: 69 PDGTFRCPFCPGKKKQDYKLKDLLQHADG 97
>05_04_0166 + 18664609-18664890
Length = 93
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -1
Query: 540 EGRSVRASSLFASWRKGGCAARRLSWVTPGFSQSRRC 430
EG R SWR+G A W Q RRC
Sbjct: 19 EGAVARRRRPAQSWRRGEAAVEERQWRCSAAHQRRRC 55
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = -3
Query: 259 RHHIHVRQSADKYSSHQRRYPECWHSLELFR--LLLPVNRQGDEYNPPGPVLVGRENRRG 86
RHH H RQ + Q+R + R L +P E P P+ +N+R
Sbjct: 140 RHHHHQRQRHHHHHQRQQRRGSRTRDPRVRRGPLRIPYGEDEKEEPPATPIASSNKNKRE 199
Query: 85 YPSSLRR 65
P + R
Sbjct: 200 EPPTKHR 206
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 417 WPSFYNVV-TGKTLALPNLIALQH 485
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,315
Number of Sequences: 37544
Number of extensions: 434625
Number of successful extensions: 1267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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