Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0953
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21070.1 68415.m02501 expressed protein                             68   6e-12
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi...    31   0.88 
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    30   1.5  
At5g50270.1 68418.m06225 F-box family protein contains F-box dom...    29   3.6  
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam...    29   3.6  
At1g34390.1 68414.m04270 transcriptional factor B3 family protei...    29   3.6  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   6.2  

>At2g21070.1 68415.m02501 expressed protein 
          Length = 483

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
 Frame = +1

Query: 76  NWDIPDGFLCPPVPGRADYIHHLADLLA----EASGTIPANASILDIGVGANCIYPLIGV 243
           NW IPDG LCP VP R++YIH + DLL+    ++ G   +     DIG GANCIYPL+G 
Sbjct: 75  NWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGFDIGTGANCIYPLLGA 134

Query: 244 HEYG 255
             +G
Sbjct: 135 SLFG 138


>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
           protein low similarity to post-transcriptional control
           of chloroplast gene expression CRP1 [Zea mays]
           GI:3289002; contains Pfam profile PF01535: PPR repeat
          Length = 855

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 85  IPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVG 213
           +P     P +PG+AD ++H + ++ E  G +P    I   G+G
Sbjct: 93  LPQHVSSPALPGKADSVNHASAIIKEDVG-VPIGDQIFKAGIG 134


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 253 HIHVRQSADKYSSHQRRYPECWHSLE 176
           HI +R +   YSS+ R  PE WH+ +
Sbjct: 419 HIGIRATFGHYSSYVRSAPETWHNFD 444


>At5g50270.1 68418.m06225 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 381

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 313 IIACALLNAWLLVSLPVKRHHIHVRQSADKYSSHQRRYPEC 191
           ++AC L  +  L+SL +++HH H+  S           PEC
Sbjct: 289 LLACLLKGSPKLISLKLEKHHGHLICSPSPLRDDLSSVPEC 329


>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 522

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 213 TNADIQNAGIRWNCSACFCQ 154
           T+  I+  G+RW CS+C C+
Sbjct: 387 TSRQIKLHGVRWYCSSCLCR 406


>At1g34390.1 68414.m04270 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
           binding domain
          Length = 600

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -2

Query: 413 NCNTTHYRANWVPGPT-LFLPTQTNGAVKPRIRTDNRLRTA*RLAAGFTTGKTPPYSCTP 237
           N + T+     +P  T + +PTQ     +P + +  ++ TA   + GF   K     C P
Sbjct: 92  NSDETYAEITLMPDTTQVVIPTQNENQFRPLVNSFTKVLTASDTSGGFFVPKKHAIECLP 151

Query: 236 ISG*IQFAPTPISRMLA 186
                Q  P P   +LA
Sbjct: 152 PLDMSQ--PLPTQELLA 166


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  FLCPPVPGRADYIHHLADLLAEASGTIPANAS 192
           FLCPP P R+   +  AD+ A  SG +    S
Sbjct: 52  FLCPPPPSRSVKQNDAADVRAPQSGLVQEKKS 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,452
Number of Sequences: 28952
Number of extensions: 315960
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)