Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0951
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    28   5.9  
07_03_1496 + 26986625-26986791,26987757-26987913,26988008-26988055     28   7.8  

>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 114 R*GRCSNCILNWVNCYAIDNVKK 182
           R G C+NCI  W +   ID+V+K
Sbjct: 168 RRGYCTNCISRWYSDIPIDDVRK 190


>07_03_1496 + 26986625-26986791,26987757-26987913,26988008-26988055
          Length = 123

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 434 QLPLALRTNLFKILQIFPPY-KHTYLVGRY 348
           + P   R  LFK  Q F    KHTYL GRY
Sbjct: 59  EAPFVPREKLFKQQQYFQNLTKHTYLKGRY 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,669
Number of Sequences: 37544
Number of extensions: 224331
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)