Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0950
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16)                  29   4.8  
SB_21532| Best HMM Match : DUF834 (HMM E-Value=5.9)                    29   4.8  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   8.3  

>SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 336 KLTSLFILTPTKILIINTHINISLSIKSCVFY-MDTKFQDNRMHGSV 199
           KL S +++ P    + +  +N   S+ SC+FY   T   D+ MH S+
Sbjct: 135 KLESNYLIDPNLTTMAHPTVNCLTSVASCMFYPPSTPTLDSGMHISI 181


>SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
          Length = 869

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 415 FFSNQ-FEAKLESKWMLT*KI*AISTSSGLTNSLL 516
           FFSNQ FE   + KW    ++   S S  LTN LL
Sbjct: 593 FFSNQVFETACQHKWKNLKEVLVTSISRNLTNKLL 627


>SB_21532| Best HMM Match : DUF834 (HMM E-Value=5.9)
          Length = 302

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 415 FFSNQ-FEAKLESKWMLT*KI*AISTSSGLTNSLL 516
           FFSNQ FE   + KW    ++   S S  LTN LL
Sbjct: 21  FFSNQVFETACQHKWKNLKEVLVTSISRNLTNKLL 55


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 430  IGWRKIRCSVHRPQ*PLYIR 371
            IGWRK+RC++ + +   YIR
Sbjct: 3085 IGWRKVRCAIDQGKFRKYIR 3104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,897
Number of Sequences: 59808
Number of extensions: 369524
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)