Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0949
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 137 9e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 134 8e-32
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 132 3e-31
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 31 1.1
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 3.5
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 3.5
04_04_1108 + 30961600-30962013,30963131-30964465 29 3.5
01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579... 29 3.5
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 28 6.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.1
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 137 bits (331), Expect = 9e-33
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ +
Sbjct: 76 MTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVL 135
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFPDVKRSTYQR 535
+SVR + EALRRAKFKFP ++ + R
Sbjct: 136 LSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 132 bits (320), Expect = 2e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYS*RTA 269
SSEALEA RI CNKY + A
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
Score = 58.0 bits (134), Expect = 7e-09
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRRLEEG 663
P RQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L + G
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPG 212
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 134 bits (323), Expect = 8e-32
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ +
Sbjct: 72 MTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVL 131
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
+SVR EALRRAKFKFP
Sbjct: 132 LSVRCKPNNAVHASEALRRAKFKFP 156
Score = 113 bits (271), Expect = 2e-25
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +3
Query: 51 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 230
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 231 GRICCNKYS*RTA 269
RI CNKY ++A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRRLEEGSG*D 675
P RQKI S+KWGFTK+ RDE+ +L+ EGR+ DG + P+ +EE SG D
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAK---SFSPMGHVEEASGSD 209
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 132 bits (319), Expect = 3e-31
Identities = 62/89 (69%), Positives = 71/89 (79%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ +
Sbjct: 383 MAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVL 442
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFPDVKR 520
+SVR D A EALRRAKFKFP +R
Sbjct: 443 LSVRCRDANAAHAQEALRRAKFKFPGRQR 471
Score = 127 bits (307), Expect = 7e-30
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +3
Query: 42 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 221
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 222 LEAGRICCNKY 254
LEA RI CNKY
Sbjct: 372 LEAARIACNKY 382
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRRLEEGSG 669
P RQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG + + G G
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHGSVADRQPGRG 521
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 270 PQFFTSTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRR 127
P+F+T ++C R + L +++ R AR + RQ S SS P+ +
Sbjct: 50 PRFYTCSFCQREFRSAQALGGHMNVHRRDRAR-LRQRQTSSSSSPSHQ 96
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 432 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 340
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 420 LDSPSCPCALVTGGRHRSSRLCAVPSSSSPTSKDLRIKEV 539
L P P L GRH +R+ +S S DLR++E+
Sbjct: 207 LAMPESPRWLAMRGRHADARVVLARTSDSAEEADLRLEEI 246
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 325 DADNVERVNSHADMELILSAVLYEYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 161
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 160 STVA 149
+ ++
Sbjct: 203 AHIS 206
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 270 PQFFTSTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 142
P F+ C + PP PL++ V + P+A + S + +++S
Sbjct: 95 PGRFSCPLCGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
>01_01_0749 -
5794140-5794346,5795445-5795558,5795856-5796008,
5796124-5796207,5796262-5796399,5796500-5796598
Length = 264
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 472 HRGSAPCQVQVPRRQKIYVSKKWGFTKYERDEFEKLREE 588
HR S P + VPRR+++Y S+++ +Y D + + E
Sbjct: 123 HRAS-PLPLFVPRRRRVYSSEEYSSDEYSSDGYSSGQHE 160
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 417 ALDSPSCPCALVTGGRHRSSRLCAVPSSSSPTSKDLRIK 533
A + + C G R++ + A+PSSSS + LR+K
Sbjct: 6 AQSAAAAACFATAGDARRAASVVAMPSSSSSATTSLRMK 44
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 386 GKPQGTVARVRIGQPIMSVRSSD 454
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,327,572
Number of Sequences: 37544
Number of extensions: 525576
Number of successful extensions: 1679
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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