Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0949
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 75 4e-14
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 32 0.51
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 31 1.2
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 2.7
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 3.6
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 3.6
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 3.6
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64) 29 3.6
SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 29 4.7
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 6.2
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 8.3
SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6) 28 8.3
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +2
Query: 371 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFP 508
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFP
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFP 46
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 31.9 bits (69), Expect = 0.51
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = -1
Query: 643 EVHVPGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLIRRSFDVGELELGTAQSLDDLC 464
++HV G + + H GG L Q H + NP++ + LE TA +
Sbjct: 12 QLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPTQT 70
Query: 463 LPPVTRAHGHDGLSNANTC 407
V A+ DGLSNAN C
Sbjct: 71 SRSVALAY--DGLSNANVC 87
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 328 IDADNVERVNSHADMELILSAVLYEYLLQQIRPASKASELSCSYSSDTK 182
+ A+ V+R+ SH M+ + S + Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 34 GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 168
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 225 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 109
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 253 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 122
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 888
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 469 GHRGSAPCQVQVPRRQKIYVSKKWGFTKYERDEF 570
G +G PC QV + +Y K GF Y+ D F
Sbjct: 368 GAKGFEPCGPQVKITKPLYERLKSGFVTYQEDAF 401
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 253 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 122
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
Length = 361
Score = 29.1 bits (62), Expect = 3.6
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 2/164 (1%)
Frame = -1
Query: 637 HVPGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLIRRSFDVGELELGTAQSLDDLCLP 458
H+P G +H P+HA S + N +++ GE L + +
Sbjct: 18 HLPSGNRLLVQHPPAFPIHAQSYLTRRRAVFNTMAVLHTVLTKGEQTLFFERPIRRPRFV 77
Query: 457 PVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA**HFIDADNVERVNSHADMEL 278
+ + S N+ Y+ R + TT +L PI++ H VE +N A+ E
Sbjct: 78 ALRQC------SLFNSWYNLEREHQITTIAALPPIATLPAGHQTAESIVETIN-RAESE- 129
Query: 277 ILSAVL--YEYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTV 152
IL+A L E Q P +A + C T+C G+ S V
Sbjct: 130 ILTAKLDPREDRAQVALPKIEALYICCDIVDRTQCLSLGEPSNV 173
>SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 476 EALRRAKFKFPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARNMDLFDAW 655
+++ A K D + + S + + LR VKR ++TA C+ + L DAW
Sbjct: 126 DSVFNALVKVLDTELYPQAEADKSSTYGLKELRLLVKRFQEILTANGCNVMKIEKLKDAW 185
Query: 656 RKV 664
K+
Sbjct: 186 AKL 188
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 260 KNCGKDQFHIRMRIHPFHVIRINKMLS 340
KN +D +RM +HP H IRIN ++S
Sbjct: 127 KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 520 SFDVGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 374
S G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 71 SCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 57 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 236
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 237 IC 242
+C
Sbjct: 500 MC 501
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 379 CVWQASGYCSTCSHWTAHHV 438
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)
Length = 197
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 541 PTSLIRRSFDVGELE-LGTAQSLDDLCLPPVTRAHGHDGLSNANTC 407
P SL R V +E LG L +PPV R H G+ N +TC
Sbjct: 102 PPSLKVRRATVASIESLGEGHRKGSLFMPPVQRGKKH-GVINIHTC 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,808,220
Number of Sequences: 59808
Number of extensions: 564689
Number of successful extensions: 2003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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