Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0949
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   140   9e-34
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    29   2.4  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.5  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z78061-3|CAB60286.1|  662|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U58734-4|AAB52501.1|  274|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL117200-16|CAB60587.1|  662|Caenorhabditis elegans Hypothetical...    28   7.3  
AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical...    28   7.3  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   7.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   9.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   9.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   9.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  140 bits (339), Expect = 9e-34
 Identities = 62/75 (82%), Positives = 65/75 (86%)
 Frame = +3

Query: 30  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 210 SSEALEAGRICCNKY 254
           SSEALEA RIC NKY
Sbjct: 61  SSEALEAARICANKY 75



 Score =  131 bits (316), Expect = 5e-31
 Identities = 61/85 (71%), Positives = 68/85 (80%)
 Frame = +2

Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
           +VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  +
Sbjct: 76  MVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDIL 135

Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
            S+R  +      IEA RRAKFKFP
Sbjct: 136 FSMRIKEGNVKHAIEAFRRAKFKFP 160



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = +1

Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRR 651
           P RQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL +
Sbjct: 160 PGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +1

Query: 70  INRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAAI 249
           + R+ + GS   + +P+  +++W R+ + L    C C      M    Q L+ ++ +   
Sbjct: 82  VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKEKAVEK 141

Query: 250 STRKELRK 273
             +K+ +K
Sbjct: 142 EKKKKAKK 149


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 463 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 341
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 393 GLPNAPRIPVWSLSAPA 343
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 90  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 236
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -3

Query: 275 PFRSSLRVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 96
           P ++ L   ++AD S LQ    QL   + H V   + +    +LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHYVIPV--ALLCSILGTIVRFCYSDD 281

Query: 95  EPRFRIRFIFAVP 57
           E  F  RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294


>Z78061-3|CAB60286.1|  662|Caenorhabditis elegans Hypothetical
           protein C48G7.3 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = -1

Query: 334 HFIDADNVERVNSHA--DMELILSAVLYEYLLQQIRP 230
           H ID ++  R+NS+   +++ +L AVL++ LL++++P
Sbjct: 311 HIIDEES-SRLNSNQILNIDAVLEAVLHKLLLREVKP 346


>U58734-4|AAB52501.1|  274|Caenorhabditis elegans Hypothetical
           protein T27A10.2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 440 VRSSDRWKAQVIEALRRAKFKFP---DVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTA 610
           VR+ D    Q +EAL+RA +KF     V+    +RS VS   +  S  S        M  
Sbjct: 114 VRNMDGDNTQPLEALKRATYKFSVSHHVQTMVPRRSSVSSGSSFGSNHSYYSEGMR-MRI 172

Query: 611 ALCSTARNMD 640
            LC +   +D
Sbjct: 173 LLCQSRNQVD 182


>AL117200-16|CAB60587.1|  662|Caenorhabditis elegans Hypothetical
           protein C48G7.3 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = -1

Query: 334 HFIDADNVERVNSHA--DMELILSAVLYEYLLQQIRP 230
           H ID ++  R+NS+   +++ +L AVL++ LL++++P
Sbjct: 311 HIIDEES-SRLNSNQILNIDAVLEAVLHKLLLREVKP 346


>AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7a protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 181 TWCPTNMNS*AQRLWRQDVSAAISTRKELRKGSVPYPHENSPFPRYPH 324
           T  PTN +    R+WR   +  +  R  +   +  +P  + PF ++P+
Sbjct: 530 TLLPTNASQDVGRVWRAPRAHRLLVRPGIPAETRQHPRSHEPFAQFPN 577


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 544 FTKYERDEFEKLREEGRLANDGCIVQYR 627
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 152 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 51
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 152 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 51
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 152 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 51
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,140
Number of Sequences: 27780
Number of extensions: 408132
Number of successful extensions: 1228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)