Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0949
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 132 2e-31
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 132 2e-31
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 132 3e-31
At5g47870.1 68418.m05914 expressed protein 30 1.3
At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identic... 30 1.7
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 28 5.1
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 8.9
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 132 bits (320), Expect = 2e-31
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ +
Sbjct: 76 MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
+SVR D EALRRAKFKFP
Sbjct: 136 LSVRCKDNHGVHAQEALRRAKFKFP 160
Score = 132 bits (319), Expect = 2e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYS*RTA 269
SSEALEA RI CNKY ++A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRRLEEGS 666
P RQKI VS+KWGFTK+ R E+ KLR R+ DG ++ HGPL + GS
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGS 213
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 132 bits (319), Expect = 2e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYS*RTA 269
SSEALEA RI CNKY ++A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 131 bits (317), Expect = 4e-31
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ +
Sbjct: 76 MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
+SVR D EALRRAKFKFP
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFP 160
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRRLEEGS 666
P RQKI VS+KWGFTK+ R +F KLR+E R+ DG ++ HGPL + GS
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGS 213
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 132 bits (318), Expect = 3e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYS*RTA 269
SSEALEA RI CNKY ++A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 131 bits (317), Expect = 4e-31
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ +
Sbjct: 76 MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
+SVR D EALRRAKFKFP
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFP 160
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLRRLEEGS 666
P RQKI VS+KWGFTK+ R ++ KLR+E R+ DG ++ HGPL + GS
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGS 213
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +2
Query: 290 RMRIHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 469
R+++ PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 470 VIEALRRAKFKFPD 511
+IE LR K PD
Sbjct: 78 LIEILRDLNKKIPD 91
>At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identical
to accelerated cell death 2 (ACD2) GI:12484129 from
[Arabidopsis thaliana]
Length = 319
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 673 LSLNLPPSVEEVHVPGGTAQCSRH*RGG 590
L NLPP V + P G+A+ S H R G
Sbjct: 82 LPCNLPPDVRNFNNPNGSAEASLHIRSG 109
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEG 591
PR+ KI+ ++ W F + +E E R +G
Sbjct: 67 PRKYKIHTTRSWEFVGLKEEEGEDYRSDG 95
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 138 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 31
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,069,131
Number of Sequences: 28952
Number of extensions: 387447
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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