Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0948
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5672A Cluster: PREDICTED: hypothetical protein;...    38   0.18 
UniRef50_Q7RD83 Cluster: Putative uncharacterized protein PY0554...    34   2.9  
UniRef50_Q174G1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_A2E8N8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_UPI0000D5672A Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 203

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 21/91 (23%), Positives = 40/91 (43%)
 Frame = +2

Query: 275 LKPLTEGLVEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVILTWSVGRIHACVKNTXX 454
           L+ LT  L  ++ S ++  E + +  NQ+ +  KLQ    P+ ++ ++  +   V++   
Sbjct: 85  LEQLTNDLYGLVQSLRHYKEALILFSNQMRATEKLQQNGSPLFISLNLKSLANLVESVIK 144

Query: 455 XXXXXXXXXXIVTENIAHVEMKASLKFMLVL 547
                      V ENIAH +      F+  L
Sbjct: 145 AYGEEFEVKEFVLENIAHAKNSDEAMFLAAL 175


>UniRef50_Q7RD83 Cluster: Putative uncharacterized protein PY05541;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05541 - Plasmodium yoelii yoelii
          Length = 496

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +3

Query: 6   RVKIFISNLSNKFVMSKTPIKELAINFVPREITTPNKDQPGLSKTVFSHVSSFHSLLID 182
           R +IF++NLSNK+ +  T   +  +N V R+I   NK++    K      ++ HSL I+
Sbjct: 268 RNRIFMTNLSNKYKIIATNKYDTILNSVYRKINKKNKEKENY-KYEMEKTNNIHSLSIN 325


>UniRef50_Q174G1 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 203

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +2

Query: 263 YPHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVILTWSVGRIHACVK 442
           YP  L+   + L  ++   +++I  +  +  QL  L  L   D+ V  TWS+G++   ++
Sbjct: 83  YPANLELYCKNLAILVTILEDVIANLNTMIEQLKVLH-LVMKDEVVGRTWSLGKVLDALQ 141

Query: 443 NTXXXXXXXXXXXXIVTENIAH 508
           +             ++TENI H
Sbjct: 142 SISGHWQSELNVRKLITENIGH 163


>UniRef50_A2E8N8 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 2636

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +2

Query: 299 VEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVILTWSVGRIHACVKN 445
           + +I S +N+IE +K ++N LD+L+ +    Q  I+T  + +  + +KN
Sbjct: 581 INVIRSGKNLIEILKYIQNFLDTLTNISKPTQRPIITKLIPKFLSLIKN 629


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,642,453
Number of Sequences: 1657284
Number of extensions: 12315938
Number of successful extensions: 29078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29070
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)