Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0948
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   3.4  
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.8  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    25   7.8  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 302  EIIDSFQNIIEGIKILKNQLDSLSK 376
            E++ + +++ + + +LKNQ+D L+K
Sbjct: 1079 EVLSAIKSLSDSVMLLKNQIDDLAK 1103


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 299 VEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVI-LTWSVGRIHACVKN 445
           V+ +   + +++ +  + + + S  +++S  + V  L WS+ R+ AC+KN
Sbjct: 214 VQYLPDSEILLDMVSAIADAIASKEQVESGTKNVYELHWSMSRLLACIKN 263


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 575 KKMLIYLQKLVLLGISSFKKIILMLHFVR 661
           K ++   QKLVLLG S+  K  L+L FV+
Sbjct: 8   KNVVTINQKLVLLGDSAVGKSSLVLRFVK 36


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 572 WKKMLIYLQKLVLLGISSFKKIIL 643
           WK + I L + + +G SSFK + L
Sbjct: 563 WKSLYILLNENLFVGQSSFKSVFL 586


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 651 WSIKIIFLNEEIPSNTNFCK 592
           WSI   FL+ E+ S   FCK
Sbjct: 216 WSIGKYFLDPEVRSKVTFCK 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,797
Number of Sequences: 5004
Number of extensions: 58903
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)