Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0948
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 31 0.87
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 31 0.87
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 2.7
02_03_0384 + 18389895-18390439,18392056-18392341 29 3.5
03_05_0533 - 25332015-25332145,25332231-25332449,25332595-253327... 29 4.7
12_01_0685 + 5848758-5849162,5849282-5849341,5849803-5849919,585... 28 6.2
09_03_0056 - 11936264-11939677 28 6.2
06_02_0098 + 11720417-11720806,11722151-11722348,11723088-117232... 28 6.2
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 8.1
10_06_0140 + 11147019-11147791,11148301-11150524 28 8.1
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 266 PHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVI 403
P + P T+ + + + +N++EG K L LQ TD P++
Sbjct: 1549 PDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIV 1594
>04_04_1212 - 31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 266 PHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVI 403
P + P ++ + + + +N++EG K L LQ TD PV+
Sbjct: 975 PDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVV 1020
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 72 LAINFVPREITTPNKDQPGLSKTVFSH--VSSFHSLLIDWV 188
+ I F+PR P D PG+ TVFS + S H DWV
Sbjct: 131 MIIFFLPRNAIIPLHDHPGM--TVFSKLLIGSLHIRSYDWV 169
>02_03_0384 + 18389895-18390439,18392056-18392341
Length = 276
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 505 TRRDESLIEVYVSSWEFDPY 564
TRRDE L+E+ + W+ DP+
Sbjct: 33 TRRDEKLLEMLLWRWQLDPH 52
>03_05_0533 -
25332015-25332145,25332231-25332449,25332595-25332754,
25332973-25333025,25334998-25335433
Length = 332
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 69 ELAINFVPREITTPNKDQPGLSKTVFSHV--SSFHSLLIDWVKLKDKGS 209
E+A+ ++P P D PG+ TVFS + S H DWV GS
Sbjct: 163 EVAVFYLPAGTVMPLHDHPGM--TVFSKLLAGSVHVQSFDWVSPSVYGS 209
>12_01_0685 +
5848758-5849162,5849282-5849341,5849803-5849919,
5850013-5850110,5850470-5851020,5851118-5851221,
5851298-5851387
Length = 474
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 63 IKELAINFVPREITTPNKDQPGLSKTVFSHV--SSFHSLLIDWVKLKDKGSKFCK-GISS 233
+K+L V R + ++ G +FSH+ + F L+I + LKD G + CK G S
Sbjct: 366 LKQLLSIDVTRRSSVILREDVGQHVHIFSHIRLTMFVELMI--LNLKDDGEELCKEGQDS 423
Query: 234 VKLHEYN 254
KL N
Sbjct: 424 TKLRLIN 430
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 584 LIYLQKLVLLG-ISSFKKIILMLHFVRIGLCQVHFLGW 694
LI LQ+++ G I ++++L+L ++ +CQ ++LGW
Sbjct: 399 LICLQRVLTNGMIHHSRRLLLVLDDLQEDVCQEYYLGW 436
>06_02_0098 +
11720417-11720806,11722151-11722348,11723088-11723210,
11723288-11723499,11723580-11723851,11723931-11724199,
11724976-11724990
Length = 492
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 338 IKILKNQLDSLSKLQSTDQPVILTWSVGRIHACVKNT 448
+K + + +S S+++ +D+P I W + CV N+
Sbjct: 195 VKAILTRRNSYSRIRYSDEPAIFAWELMNEPRCVSNS 231
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 269 HLLKPLTEGLVEIIDSFQNIIEGIKILKNQLD 364
HLL+ L ++ S Q IEG KI+K +L+
Sbjct: 1497 HLLQGKNRELCGVVGSLQVAIEGAKIVKEELE 1528
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 36 NKFVMSKTPIKELA-INFVPREITTPNKDQPGLSKTVFSHVSSFHSLLID 182
++FV+ + ++ L ++ V +TT +K QP + + ++ SFH L D
Sbjct: 801 DRFVIERGDLQSLRRLHIVVVSMTTMSKQQPEIQEGALPNLESFHLLCKD 850
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,704
Number of Sequences: 37544
Number of extensions: 298658
Number of successful extensions: 645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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