Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0948
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    24   4.0  
EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            23   7.0  

>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 469 VQTKKNCDRKHSTRRDESLIEVYVSSWEFDPYLNMEENAYLFAEI 603
           +  KK+ + K   RRD+     +   +  D  L  EEN  L A++
Sbjct: 79  IMMKKSRETKEEARRDKEKAIRHREEYRRDMALIREENTKLLAQL 123


>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 599 KLVLLGISSFKKIILMLHFVR 661
           KLVLLG S+  K  L+L FV+
Sbjct: 26  KLVLLGESAVGKSSLVLRFVK 46


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,405
Number of Sequences: 2352
Number of extensions: 12672
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)