Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0948
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    29   4.2  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical ...    28   7.3  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   7.3  
L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 555 KFPRTNINFNEAFISTCAMFSVTIFFSLYSFKSDSYV 445
           K+ + +IN+    ++ CA+ S+ + F  + F SD  V
Sbjct: 113 KYAKLSINYYYLMVTLCALISLLVTFCKFVFYSDEVV 149


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 538 VSSWEFDPYLNMEENAYLFAEIGVAGNFFI*KNYFNAPFR 657
           V+ W+ DP+ +  E A ++ E+G +  +F   +Y     R
Sbjct: 163 VTGWQIDPFGHSREMANIYREMGYSSVYFARIHYLEKQIR 202


>AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical
           protein Y62E10A.4 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 576 FHVQIWVKFPRTNINFNEAFISTCAMFSVTIFFSLYSFKSDSYVFL 439
           ++V   +++ +   +F  A    C  FSV I +S YS+ SDS + L
Sbjct: 108 YNVTYPLRYSQLPNSFYIALFLFCVGFSVLITYSGYSYASDSEIVL 153


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 582 IFFHVQIWVKFPRTNINFNEAFISTCAMFSV 490
           I  H   W++F +T +  ++  +S C+ FS+
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSI 210


>L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical
           protein C29E4.13 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  ISNLSNKFVMSKTPIKELAINFVPREITTPNKD 119
           IS  S +   ++  ++ +AINF P  +TTP++D
Sbjct: 254 ISLDSCQIPQTRPELQNIAINFRPMSVTTPHQD 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,720
Number of Sequences: 27780
Number of extensions: 308992
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)