Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0948
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11720.1 68414.m01345 starch synthase, putative strong simila...    30   1.3  
At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containi...    29   2.2  
At3g25830.1 68416.m03218 myrcene/ocimene synthase, putative simi...    29   3.9  
At3g25820.1 68416.m03215 myrcene/ocimene synthase, putative simi...    29   3.9  
At4g24010.1 68417.m03450 cellulose synthase family protein simil...    28   5.1  
At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-conta...    28   6.8  
At3g57340.1 68416.m06382 DNAJ heat shock N-terminal domain-conta...    28   6.8  
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    27   9.0  

>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 266 PHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLDSLSKLQSTDQPVI 403
           P +  P  +  + +  + +N++EG +  K +L +   L+S D PV+
Sbjct: 787 PDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSADFPVV 832


>At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA-binding protein
          Length = 596

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 613 QQHQFLQINKHFLPCSNMGQIPKN*H 536
           Q+ Q+L IN HFL   +M  +P+  H
Sbjct: 163 QEEQYLSINPHFLHLQSMDTVPRQDH 188


>At3g25830.1 68416.m03218 myrcene/ocimene synthase, putative similar
           to myrcene/ocimene synthase [Arabidopsis thaliana]
           GI:9957293; contains Pfam profiles PF03936: Terpene
           synthase family, metal binding domain, PF01397: Terpene
           synthase, N-terminal domain
          Length = 600

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 262 IIILYSCSFTDEIPLQNLEPLS 197
           I+I + C F+D+I +QNLE LS
Sbjct: 448 ILIHFYCVFSDQISVQNLETLS 469


>At3g25820.1 68416.m03215 myrcene/ocimene synthase, putative similar
           to GI:9957293; contains Pfam profile: PF01397 terpene
           synthase family
          Length = 600

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 262 IIILYSCSFTDEIPLQNLEPLS 197
           I+I + C F+D+I +QNLE LS
Sbjct: 448 ILIHFYCVFSDQISVQNLETLS 469


>At4g24010.1 68417.m03450 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 770

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 637 YFNAPFRPYWSMSSPFFGMV 696
           Y N+PF+P+WS+    +G++
Sbjct: 529 YCNSPFKPFWSIPLTVYGLL 548


>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 72  LAINFVPREITTPNKDQPGLSKTVFSHVSSFHSLLIDWVKLKDKGSKFCKGISSVKLHEY 251
           L I+ +  E+     D+PG +K+  S  +   S   D   L+ +GS      SS+   E 
Sbjct: 41  LPIDDLVSELNNNKSDEPGSAKSPGSAAAKDSSNSSDRPSLRQRGSSTTSSSSSMSYTEE 100

Query: 252 NMIIIR 269
            + I+R
Sbjct: 101 QISIVR 106


>At3g57340.1 68416.m06382 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 72  LAINFVPREITTPNKDQPGLSKTVFSHVSSFHSLLIDWVKLKDKGSKFCKGISSVKLHEY 251
           L I+ +  E+     D+PG +K+  S  +   S   D   L+ +GS      SS+   E 
Sbjct: 41  LPIDDLVSELNNNKSDEPGSAKSPGSAAAKDSSNSSDRPSLRQRGSSTTSSSSSMSYTEE 100

Query: 252 NMIIIR 269
            + I+R
Sbjct: 101 QISIVR 106


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            related to TGF-beta resistance-associated  protein TRAG
            (GI:15624071) {Mus musculus};  similar to beta-transducin
            repeats containing protein - Homo sapiens,PID:e1284220;
            3' EST no_NP:TC8031
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 551  NLTHI*TWKKMLIYLQKLVLLGISSFKKIILMLHFVRIGLC 673
            N++H+   K+++ +L     L  +S +K++L  H V +G C
Sbjct: 1404 NISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVELGTC 1444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,091
Number of Sequences: 28952
Number of extensions: 278247
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)