Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0947
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    29   0.75 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    28   0.99 
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    28   0.99 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   5.3  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    25   9.2  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   9.2  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 263 INLQKYIRCLVHVFFKLFYIEALMELVYIFLILNLHSDM---YFLKKANLLQ 409
           I+ QKY  C++   + LF  +  +    I  + N H D+   + LKK  +L+
Sbjct: 242 ISPQKYFSCILPQVWSLFSTQPRLASQLIIAVTNTHCDIVTSFLLKKLQILE 293


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 454 KIVISKFVL-NLVPFWFWTISNVFCFFLLFYLVMCFINI*NLIYIICEVNLRCGCWA 621
           ++V+SK ++ +++  +   +S +F FF +F LV   +NI N+I +     L C  +A
Sbjct: 80  RLVLSKVLITHIISAFLSFLSAIFVFFSIF-LVNQAVNIINIIVVFITTLLTCLAFA 135


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 350 FLILNLHSDMYFLKKANLLQNSSLY 424
           FLI  LHSD+YFL   +++   ++Y
Sbjct: 201 FLIETLHSDIYFLHSPSIIALGAIY 225


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 409  KFFSLYLCSLLNSLVKIVISKFVLNLVPFWFWTISNVFC 525
            +F+S  L  +  SLV   ++ FV     F  WT  N+ C
Sbjct: 1174 RFWSYMLDGIYQSLVCFGVALFVFKFGDFVSWTGRNIEC 1212


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 439 LNSLVKIVISKFVLNLVPFWFWTISNVFCFF 531
           LN L++I +S + +   PF  +TI+N  C F
Sbjct: 161 LNMLIRIRLSLYEIIPTPFQHFTIANGRCTF 191


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 395 PFLRNTCRNVNLKLKKYKPTPSMPLYKII*KKHG-PDNEY 279
           P LR +   +N  LKKY P P + +  +  K  G P N Y
Sbjct: 106 PQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAY 145


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 51  GDYSNLL*EHKSIKNDV*KCSDISISA 131
           G+ +NLL E+KS+K      SDIS S+
Sbjct: 154 GNNNNLLKENKSLKTTAKDLSDISSSS 180


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 337 VGLYFFNFKFTFRHVFLKKG*LITKFFSLYLCSLLNSLVKIVISKFVLNLVPFWFW 504
           V L F +F+F  R   L     +  +FS ++   L SL KI+       LVPFW W
Sbjct: 488 VPLQFISFRFNRRLSLLFA---VLTYFSTFI--FLCSLSKILNGP----LVPFWLW 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,502
Number of Sequences: 5004
Number of extensions: 45364
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)