Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0947
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175...    28   5.4  
12_02_0514 - 19912066-19913346                                         27   9.5  
11_08_0098 - 28334865-28336114,28336228-28336357                       27   9.5  

>01_05_0389 +
           21716056-21716191,21716275-21716597,21716889-21717518,
           21717602-21718054
          Length = 513

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 254 FIFINLQKYIRCLVHVFFKLFYIEALMELV---YIFLIL 361
           F FI  Q ++  L H+ F LFY    MEL+   ++F  L
Sbjct: 436 FTFIIAQIFLMMLCHLKFGLFYFFGAMELIMTGFVFFFL 474


>12_02_0514 - 19912066-19913346
          Length = 426

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 133 CALIEMSEHFYTSFFIDL 80
           CAL+++S H YTS F D+
Sbjct: 354 CALVDVSNHRYTSMFEDV 371


>11_08_0098 - 28334865-28336114,28336228-28336357
          Length = 459

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 557 KHITK*NSKKKQKTLEIVQNQKGTKFNTNLLITIFTKEFSNEHKYKEKNFVIS 399
           + I +    K+++     ++   ++ N+NL   IF++EF+ + K K+K    S
Sbjct: 16  RRIQRREKSKREREKGKRRSSSSSRLNSNLAACIFSQEFNCKKKKKKKKSTTS 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,866
Number of Sequences: 37544
Number of extensions: 224809
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)