Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0947
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_56355| Best HMM Match : U-box (HMM E-Value=0.00021)                 28   5.6  
SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 431 HKYKEKNFVIS*PFLRNTCRNVNLKLKKYKPTPSMPLYKII*KKHGPDNEYTFV 270
           H Y +++F       R   + + + +  Y+P P   L+KI+    G D EY FV
Sbjct: 690 HAYFKRHFTNE--EFREVRKILEILIATYEPLPVKELFKILQNSDGLDYEYDFV 741


>SB_56355| Best HMM Match : U-box (HMM E-Value=0.00021)
          Length = 191

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 403 ITKFFSLYLCSLLNSLVKIVISKFVLNLVPFWFWTISNVFCFFLLFYLVMCFI 561
           IT F    L   L+ ++++V+  FVL LVP      + +F   L   +V+CF+
Sbjct: 124 ITVFQKHSLVQRLDEVIQVVLG-FVLFLVPKLAHAFNGIFDGHLSLVVVLCFV 175


>SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 448 LVKIVISKFVLNLVPFWFWTISNVFCFFLLFYLVMCFINI*NLIYIICEV 597
           ++ I+I   ++ ++      +  +   F++  +V CFIN    IY+IC++
Sbjct: 13  IIIIIIIIIIIIIIVIIIVIVVVIIIIFIVVVVVFCFIN----IYVICDI 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,562
Number of Sequences: 59808
Number of extensions: 290326
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)