Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0947
         (639 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065899-1|BAC06115.1|  312|Homo sapiens seven transmembrane hel...    33   0.65 
AB065963-1|BAC06175.1|  318|Homo sapiens seven transmembrane hel...    31   3.4  

>AB065899-1|BAC06115.1|  312|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 312

 Score = 33.5 bits (73), Expect = 0.65
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 245 VIRFIFINLQ--KYIRCLVHVFFKLFYIEALMELVYIFLIL----NLHSDMYFLKKANL 403
           V  F+F+ L   + I+ L+ +FF +FY+ +LM  + I L +     L S MYFL  ANL
Sbjct: 9   VSEFVFLGLSDSRKIQLLLFLFFSVFYVSSLMGNLLIVLTVTSDPRLQSPMYFL-LANL 66


>AB065963-1|BAC06175.1|  318|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 318

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +2

Query: 245 VIRFIFINLQKY--IRCLVHVFFKLFYIEALMELVYIFLIL----NLHSDMYF 385
           V  FIF+ L +   +R +  V F LFYI  ++  + IFL++     LH+ MYF
Sbjct: 13  VTEFIFLGLSQDSGMRWIFFVLFLLFYIVIMVGNLLIFLMVFSDPQLHTPMYF 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,741,703
Number of Sequences: 237096
Number of extensions: 1363811
Number of successful extensions: 2075
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)