Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0947
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    34   0.099
U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    32   0.30 
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U50311-2|AAA92308.2|  486|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U58761-1|AAB00712.1|  333|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL110484-19|CAB54410.1|  217|Caenorhabditis elegans Hypothetical...    27   8.6  
AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical...    27   8.6  

>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 288 QRIYFCKLMKMKRIT*IMMHSLN-HFSFV*CKIISMSVNYKFQIIDHCNQCANAH*LKCQ 112
           Q+IYFCK  K + +  ++++ L  HF  + C + +   N + +  D   +   A  ++C+
Sbjct: 183 QKIYFCKTTKSESVHQVVLNKLTLHFEIIKCSVCTYDKNLELEYYDKKTK-LYAETVRCE 241

Query: 111 ST 106
           +T
Sbjct: 242 TT 243


>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 409 KFFSLYLCSLLNSLVKIVISKFVLNLVPFWFWTISNVF--CFFLLFYLVMCFIN 564
           K+ SL+LCS       +     + +L+PF       VF  C   LFYLV+ ++N
Sbjct: 142 KWISLFLCSEFTVACGVSAIVMLYDLLPFAVMAFLGVFISCASFLFYLVLFYMN 195


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 539 NSKKKQKTLEIVQNQKGTKFNTNLLITIFTKEFSNEHKYKEK 414
           NS ++++ LE+++     K+ TN+  TIF  +  NE +  EK
Sbjct: 2   NSPQEEELLELIEKYNEDKYCTNMNWTIFLGDHENEKEANEK 43


>Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical
           protein C03E10.1 protein.
          Length = 274

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 367 TFRHVFLKKG*LITKFFSLYLCSLL-NSLVKIVISKFVLNLVPFWFWTISNVFCFFLLFY 543
           T R++  +   L    F+  LC+LL N+L+ +    FVLN++PF       ++ FFL++ 
Sbjct: 181 TKRYMLSESFELCQSSFNAILCALLINTLLFVSFWLFVLNIIPF-----GVIYQFFLIYG 235

Query: 544 LVM 552
           +++
Sbjct: 236 VIL 238


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 364 FTFRHVFLKKG*LITKFFSLYLCSLLNSLVKIVISKFVLNLVPFWFWTISNVFCFFLLFY 543
           F    VFL K  L+ + FS +LC ++    K V S+ VL +  F+ W  +    +F   Y
Sbjct: 61  FLLTDVFLYKPLLVFEAFSYFLCWVIFVFGKSVWSQQVLEV--FYGWATATEIAYFAYIY 118

Query: 544 L 546
           +
Sbjct: 119 V 119


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 494 KGTKFNTNLLITIFTKEFSNEHK---YKEKNFVIS*PFLRNTCRNVNLKL 354
           KG + N N+++    ++ S +HK   +KEK FV+    L +  RN ++K+
Sbjct: 9   KGEENNNNVILKEHHEQVSVKHKKREFKEKTFVVRESLLTSEFRNGHMKI 58


>U50311-2|AAA92308.2|  486|Caenorhabditis elegans Hypothetical
           protein C25E10.4 protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +1

Query: 364 FTFRHVFLKKG*LITKFFSLYLCSLLNSLVKIVISKFVLNLVPFWFWTISNVFCFFLLFY 543
           ++F+   +K   ++++F +++ C++  S+  +   K    +  +    +SN  C  L  Y
Sbjct: 93  WSFKARSVKYPMIVSRFIAIFACTIYLSVEYVPTGKRYALMCVYILIGVSNSACTILRGY 152

Query: 544 LVMC 555
           LVMC
Sbjct: 153 LVMC 156


>U58761-1|AAB00712.1|  333|Caenorhabditis elegans Hypothetical
           protein C01F1.4 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 284 RCLVHVFFKLFYIEALMELVYIFLIL 361
           +C+   F++ FY  AL+ L+ +FLI+
Sbjct: 161 KCMGIKFYENFYFRALVSLIIVFLII 186


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 400 LITKFFSLYLCSLLNSLVKIVISKFVLNLVPFWFWTI-SNVFCFFLLFYLV 549
           ++ K F   L ++      I+I+  + NLV    WT  SN+F F ++FYLV
Sbjct: 134 VLKKLFEYILLTICFVWTLIIIT--IRNLVE---WTCDSNIFTFLIIFYLV 179


>AL110484-19|CAB54410.1|  217|Caenorhabditis elegans Hypothetical
           protein Y38E10A.19 protein.
          Length = 217

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 322 YIK*FKKNMDQTTNILL*INEDETNHL 242
           Y++ F+K +++T N+LL   E   NHL
Sbjct: 12  YVEHFEKALEKTQNVLLEFAESPLNHL 38


>AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical
           protein Y55H10A.2 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 463 ISKFVLNLVPFWFWTISNVFCFFLL---FYLVMCFINI*NLIYIICEVNLRCGCWATHG 630
           I+  V ++ P W+   ++++ FFLL   F + M   +I  ++ I     +   C A +G
Sbjct: 107 INFLVCSVAPLWYMRATHLYTFFLLSAPFTIAMFLTSINAVLLINVNTQIAALCIAANG 165


>AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical
           protein F42A6.1 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 463 ISKFVLNLVPFWFWTISNVFCFFLL---FYLVMCFINI*NLIYIICEVNLRCGCWATHG 630
           I+  V ++ P W+   ++++ FFLL   F + M   +I  ++ I     +   C A +G
Sbjct: 84  INFLVCSVAPLWYMRATHMYTFFLLSAPFTIAMFLTSINAVLLINVNTQIAALCIAANG 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,669
Number of Sequences: 27780
Number of extensions: 248075
Number of successful extensions: 691
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)