Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0947
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          27   0.20 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.4  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -2

Query: 566 IFIKHITK*NSKKKQKTLEIVQNQKGTKFN 477
           ++I+H+TK N+  ++K  E+  N+KG  F+
Sbjct: 94  VYIEHLTKLNNAIEEKRFELT-NRKGVVFH 122


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
 Frame = +1

Query: 457 IVISKFVLNLVPFWFWTISNVFC--------FFLLFYLVMCFINI*NLIYIICEVNLR 606
           I++  F+L  +PF+   +   FC        F +LF+L  C   I   IY +   + R
Sbjct: 13  IIVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFR 70


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
 Frame = +1

Query: 457 IVISKFVLNLVPFWFWTISNVFC--------FFLLFYLVMCFINI*NLIYIICEVNLR 606
           I++  F+L  +PF+   +   FC        F +LF+L  C   I   IY +   + R
Sbjct: 461 IIVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFR 518


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 539 NSKKKQKTLEIVQNQKGTKFNTNLLITIFTKEFSNEHKYKE 417
           N+  +   +++  NQ  T     +   I   + SNE KY++
Sbjct: 566 NTTDQSMDIDVCDNQTYTSLQMAMKNPIEFTDLSNERKYED 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,572
Number of Sequences: 438
Number of extensions: 3131
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)