Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0946
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 520 YI*IIIRLVGGLFIRIKCFCQVDIKSLIAYSSV 618
           Y+  I+ L  G++ R+ C+ Q  +KS+ A + +
Sbjct: 202 YVPCIVML--GIYCRLYCYAQKHVKSIRAVTKL 232


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 314 MNMYLLYISII--FAFLVKIPIYFVHL*LPKAHVEAP 418
           +  ++L+  I+  F+  V + +  VH   P+ HV AP
Sbjct: 303 LGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAP 339


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 595 ILYQPDKNI 569
           IL+QPDKNI
Sbjct: 763 ILFQPDKNI 771


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 595 ILYQPDKNI 569
           IL+QPDKNI
Sbjct: 853 ILFQPDKNI 861


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,364
Number of Sequences: 438
Number of extensions: 1995
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)