Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0946
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    29   3.9  
At4g21120.1 68417.m03054 amino acid permease family protein simi...    29   3.9  

>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 308 FNMNMYLLYISIIFAFLVKIPIYFV 382
           +  N+ L+YISI F FLVK+   F+
Sbjct: 37  YKYNLILVYISIFFFFLVKLETTFM 61


>At4g21120.1 68417.m03054 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 594

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 496 TGSKLKLNYI*IIIRLVGGLFIRIKCFCQVDIKSLIAYSSVAPY 627
           T    + NYI  II +V  LF+ I  F + D+K+   YS   PY
Sbjct: 222 TKGSSRFNYIASIIHMVVILFVIIAGFTKADVKN---YSDFTPY 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,135,027
Number of Sequences: 28952
Number of extensions: 106644
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)