Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0945
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical ...    29   3.7  
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    27   8.6  

>CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical
           protein K09E10.1 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 305 YGLRVMLDR-CLKRC*VGMSFCQYIVQNIYVLTIHFRKSLSKNHKKIYLSK 454
           Y L  M++R C+KR     S+C +   N       F  S +KNH K+++ +
Sbjct: 443 YDLETMIERGCVKRSPNHPSWCDFKFLNGKFNIAIFGNSYAKNHHKMFIQE 493


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 305 YGLRVMLDR-CLKRC*VGMSFCQYIVQNIYVLTIHFRKSLSKNHKKIYLSK 454
           Y + VM++  C+KR      +C Y ++        F  S +KNH K+++ +
Sbjct: 441 YDIEVMIEPGCVKRTPQHSRWCDYELKGDEFKLAIFGNSYTKNHHKMFIQE 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,438
Number of Sequences: 27780
Number of extensions: 161951
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)