Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0944
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    66   5e-12
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   7.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = +3

Query: 267 HRRLSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTK 440
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENAL 172

Query: 441 QRLFLTILLGFYF 479
           + L++TI L F F
Sbjct: 173 KGLYMTIALSFLF 185



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 21/42 (50%), Positives = 33/42 (78%)
 Frame = +2

Query: 503 YRASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIWLYSTF 628
           + A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+  Y+ +
Sbjct: 194 WNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIY 235



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 136 RDISREGTYQGKHTILVNKGLR*G 207
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 642 KSDYLNVEYSQINR 601
           K+DY+ V YSQINR
Sbjct: 41  KADYIFVNYSQINR 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,023
Number of Sequences: 5004
Number of extensions: 30546
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)